Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 338 a.a., Methyltransferase (EC 2.1.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 62/287 (21%), Positives = 126/287 (43%), Gaps = 33/287 (11%)

Query: 93  DTYRMIYAEADYLPSIILDKYNKIASIQISSKIMDNYSDL-IFECISEITDVETMYVQS- 150
           D YR+ +   +  P + +D+Y     +Q   K ++    L +   ++E   +ET+ V + 
Sbjct: 28  DCYRLFHGSQEGAPGLTIDRYGPQLLVQSFHKALERDDLLQLHGIVNERLGLETLLVYND 87

Query: 151 ---GKKGSDVKTKIF-GDKSQIETVISEGNAKFNVNMKGHKTG----FFLDQRDNRIDLE 202
              G    D +  ++  D++ ++ ++       N  ++G   G     FLD R+ R  ++
Sbjct: 88  RARGNSRVDRQDTVYQADEAALQDLVGH-EWGLNYRVRGRHAGQDPLLFLDLRNARGWVK 146

Query: 203 NYVKPGDKVLDICSYTGGFAVHAGIKGG-EVTAVDLSEKALAVAEENMELNRVKNYNCMV 261
            + +    VL++ +YT G  + A   G  EV  +D +E  LAV  EN  LN        V
Sbjct: 147 AHSR-NKSVLNLFAYTCGVGLSAAAGGAREVCNLDFAEGNLAVGRENGLLNPDLPPMAFV 205

Query: 262 -SNAFDAMKEMIK-----------------NNEKFDVVVLDPPAFTDSSKDIKNALNAYN 303
            S+ F A++++                      ++D+V+LDPPA+  S+    + L  Y 
Sbjct: 206 QSDYFPAIRQLAGLPISQRRGQKLPNYVRLEQRQYDLVLLDPPAWAKSAFGTVDLLRDYQ 265

Query: 304 SMNYLGLKLA--KRILVTCSCSHHIDRESFKHTIVSSSLRAKKEIRQ 348
           S+    L       +L+ C+    +  + ++  ++  + +A + +R+
Sbjct: 266 SLLKPALLTTADNGVLICCNNLAKVSMDDWREQVLRCAEKAGRPVRE 312