Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 398 a.a., LSU m5C1962 methyltransferase RlmI from Pseudomonas fluorescens FW300-N2E2

 Score =  161 bits (407), Expect = 3e-44
 Identities = 105/330 (31%), Positives = 173/330 (52%), Gaps = 22/330 (6%)

Query: 60  KILTRENE-EIDKDFFFKRINNANNYRTDILNYKDTYRMIYAEADYLPSIILDKYNKIAS 118
           ++L+R+ +  +DK     R+N A + R  + + K  YR++Y ++D LP +++D++  I  
Sbjct: 68  RLLSRDVKLPLDKSLLVHRLNVALSLRERLFD-KPFYRLVYGDSDLLPGLVVDRFGDILV 126

Query: 119 IQISSKIMDNYSDLIFECISEITDVETMYVQSGKKGSDVKTKIFGDKSQIETV------- 171
           +QI+S  M+ + D +   ++++     +  ++     D +    G    +ETV       
Sbjct: 127 VQIASATMEAHKDDVIAALTQVLKPSGILFKNDSAARDAE----GLNRYVETVFGLVPEW 182

Query: 172 --ISEGNAKFNVN-MKGHKTGFFLDQRDNRIDLENYVKPGDKVLDICSYTGGFAVHAGIK 228
             + E   KF    M+G KTG+F D R NR  L  Y K G +VLD+ SY GG+ V A   
Sbjct: 183 VALEENGVKFEAPVMEGQKTGWFYDHRMNRARLAPYAK-GKRVLDLFSYIGGWGVQAAAF 241

Query: 229 GG-EVTAVDLSEKALAVAEENMELNR-VKNYNCMVSNAFDAMKEMIKNNEKFDVVVLDPP 286
           G  EV  VD S  AL   E N  LN   +   C+  + F+A+KE+  + E+FDV+V DPP
Sbjct: 242 GASEVFCVDASAFALDGVERNAALNGFAEKLTCIEGDVFEALKELKASEERFDVIVADPP 301

Query: 287 AFTDSSKDIKNALNAYNSMNYLGLKLAKR--ILVTCSCSHHIDRESFKHTIVSSSLRAKK 344
           AF    KD+KN   AY  +N   ++L  +  ILV+ SCS H+  +  ++ +++S+    +
Sbjct: 302 AFIKRKKDLKNGEGAYRRLNEQAMRLLSKDGILVSASCSMHLPEDDLQNILLTSARHLDR 361

Query: 345 EIRQIGSYRTQAPDHIITMANKDLEYLKCL 374
            I Q+     Q PDH +  A  +  Y+K +
Sbjct: 362 NI-QLLERGGQGPDHPVHPAIAETRYIKSI 390