Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 398 a.a., Predicted SAM-dependent methyltransferases from Pseudomonas stutzeri RCH2

 Score =  160 bits (405), Expect = 6e-44
 Identities = 106/330 (32%), Positives = 170/330 (51%), Gaps = 22/330 (6%)

Query: 60  KILTRE-NEEIDKDFFFKRINNANNYRTDILNYKDTYRMIYAEADYLPSIILDKYNKIAS 118
           ++L+R+    +DK     RI  A + R  +   +  YR++Y ++D LP +++D++  I  
Sbjct: 68  RLLSRDLKHSLDKSLLVHRIKVALSLRERLFE-QPCYRLVYGDSDLLPGLVVDRFFDILV 126

Query: 119 IQISSKIMDNYSDLIFECISEITDVETMYVQSGKKGSDVKTKIFGDKSQIETV------- 171
           +Q++S  M+   D + E + ++     +  ++     D +    G +  ++T        
Sbjct: 127 VQLASATMERNKDAVLEALVQVLKPSGVLWKNDSSARDAE----GLERYVDTAFGVVPEW 182

Query: 172 --ISEGNAKFNVN-MKGHKTGFFLDQRDNRIDLENYVKPGDKVLDICSYTGGFAVHAGIK 228
             + E   KF    M+G KTG+F D R NR  L  YVK G +VLD+ SY GG+ V A   
Sbjct: 183 VALEENGVKFEAPVMQGQKTGWFYDHRMNRARLAPYVK-GKRVLDLFSYIGGWGVQAAAF 241

Query: 229 GG-EVTAVDLSEKALAVAEENMELNRV-KNYNCMVSNAFDAMKEMIKNNEKFDVVVLDPP 286
           G  EV  VD S  AL   E N  LN V +   C+  +AF+AMKE+    E+F+VV+ DPP
Sbjct: 242 GASEVFCVDASAFALDGVERNAALNGVAEKMTCVEGDAFEAMKELKNAEERFEVVITDPP 301

Query: 287 AFTDSSKDIKNALNAYNSMNYLGLKLAKR--ILVTCSCSHHIDRESFKHTIVSSSLRAKK 344
           AF    KD+KN   AY  +N   ++L  +  ILV+ SCS H+  +  ++ ++ S+    +
Sbjct: 302 AFIKRKKDLKNGEAAYRRLNEAAMRLLNKDGILVSASCSMHLPEDDLQNILLGSARHLDR 361

Query: 345 EIRQIGSYRTQAPDHIITMANKDLEYLKCL 374
            I Q+     Q PDH +  A  +  Y+K L
Sbjct: 362 NI-QLLERGAQGPDHPVHPAIPETRYIKSL 390