Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 398 a.a., SAM-dependent methyltransferase from Pseudomonas syringae pv. syringae B728a

 Score =  161 bits (407), Expect = 3e-44
 Identities = 104/330 (31%), Positives = 173/330 (52%), Gaps = 22/330 (6%)

Query: 60  KILTRENE-EIDKDFFFKRINNANNYRTDILNYKDTYRMIYAEADYLPSIILDKYNKIAS 118
           ++L+R+ +  +DK     R+N A + R  + + K  YR++Y ++D LP +++D++  I  
Sbjct: 68  RLLSRDIKLPLDKSLLVHRLNVALSLRERLFD-KPFYRLVYGDSDLLPGLVVDRFGDILV 126

Query: 119 IQISSKIMDNYSDLIFECISEITDVETMYVQSGKKGSDVKTKIFGDKSQIETV------- 171
           +Q++S  M+N+ + I   + ++     +  ++     D +    G    +ETV       
Sbjct: 127 VQLASATMENHKEDIIAALVQVIKPSGILFKNDSAARDAE----GLNRYVETVFGLVPEW 182

Query: 172 --ISEGNAKFNVN-MKGHKTGFFLDQRDNRIDLENYVKPGDKVLDICSYTGGFAVHAGIK 228
             + E   KF    M G KTG+F D R NR  +  YVK G +VLD+ SY GG+ + A   
Sbjct: 183 VALEENGVKFEAPVMAGQKTGWFYDHRMNRARIAPYVK-GKRVLDLYSYIGGWGIQAAAF 241

Query: 229 GG-EVTAVDLSEKALAVAEENMELNR-VKNYNCMVSNAFDAMKEMIKNNEKFDVVVLDPP 286
           G  +VT VD S  AL   E N  LN   +   C+  + F+A+KE+    E+FDV+V DPP
Sbjct: 242 GASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEALKELKAAEERFDVIVADPP 301

Query: 287 AFTDSSKDIKNALNAYNSMNYLGLKLAKR--ILVTCSCSHHIDRESFKHTIVSSSLRAKK 344
           AF    KD+KN   AY  +N   ++L  +  ILV+ SCS H+  +  ++ +++S+    +
Sbjct: 302 AFIKRKKDMKNGEGAYRRLNEQAMRLLSKDGILVSASCSMHLPEDDLQNILLTSARHLDR 361

Query: 345 EIRQIGSYRTQAPDHIITMANKDLEYLKCL 374
            I Q+     Q PDH +  A  +  Y+K +
Sbjct: 362 NI-QLLERGGQGPDHPVHPAIAETRYIKSI 390