Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 338 a.a., conserved hypothetical protein from Pseudomonas syringae pv. syringae B728a

 Score = 53.5 bits (127), Expect = 8e-12
 Identities = 60/294 (20%), Positives = 122/294 (41%), Gaps = 31/294 (10%)

Query: 93  DTYRMIYAEADYLPSIILDKYNKIASIQISSKIMDNYSDL-IFECISEITDVETMYVQSG 151
           D YR+ +   +    + +D+Y     +Q     +D  + L + E ++    ++T+ V + 
Sbjct: 28  DCYRLFHGSQEGASGLTIDRYGPQLLVQSFHTRLDRDALLALHEQVNTRLGLDTLLVYND 87

Query: 152 KKGSDVKTKIFGDKSQIETVISEGNAK----FNVNMKGHKTG----FFLDQRDNRIDLEN 203
           +   + +        + E      +       N  ++G   G     FLD R+ R  ++ 
Sbjct: 88  RSQGNSRVDRHDTVYKAEDAALADHVGHEWGLNYRVRGRHAGQDPLLFLDLRNTRGWVKQ 147

Query: 204 YVKPGDKVLDICSYTGGFAVHAGIKGG-EVTAVDLSEKALAVAEENMELN-RVKNYNCMV 261
           +   G  VL++ +YT G  + A   G  EV  +D +E  LAV  EN  LN ++     + 
Sbjct: 148 H-SAGKSVLNLFAYTCGVGLSAAAGGASEVCNLDFAEGNLAVGRENGALNPQLPPMQFIQ 206

Query: 262 SNAFDAMKEMIK-----------------NNEKFDVVVLDPPAFTDSSKDIKNALNAYNS 304
           S+ F A++++                      ++D+V+LDPPA+  S+    + L  Y S
Sbjct: 207 SDYFPAIRQLAGLPIAARRSQQLPSYVKLQQRQYDLVLLDPPAWAKSAFGTVDLLRDYQS 266

Query: 305 MNYLGLKLA--KRILVTCSCSHHIDRESFKHTIVSSSLRAKKEIRQIGSYRTQA 356
           +    L       +L+ C+    +  + ++  ++  + +A + +R     R  A
Sbjct: 267 LLKPALLTTADDGVLICCNNLAKVSMQDWREQVLRCATKAGRPVRDCQEMRPAA 320