Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 416 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  107 bits (266), Expect = 8e-28
 Identities = 91/328 (27%), Positives = 153/328 (46%), Gaps = 18/328 (5%)

Query: 60  KILTRE-NEEIDKDFFFKRINNANNYRTDILNYKDTYRMIYAEADYLPSIILDKYNKIAS 118
           ++L R+    I K++ F R+  A   R D L  +  YR+++ EAD LP +++D+   + +
Sbjct: 89  RVLDRDLGASITKEWVFVRLQRALRLR-DTLFDQPYYRLVHGEADGLPGLVVDRLGDVIA 147

Query: 119 IQISSKIMDNYSDLIFECISEITDVETMYVQSGK-----KGSDVKTKIFGDKSQIE---T 170
           +Q +S  MD  + LI + I  +     + + +       +G   +T +   + QI+    
Sbjct: 148 VQANSAGMDLLTPLILDAIENLLAPRAIVLINDAPVRLLEGLTQETAL--ARGQIDGPVP 205

Query: 171 VISEGNAKFNVNMKGHKTGFFLDQRDNRIDLENYVKPGDKVLDICSYTGGFAVHAGIKGG 230
           VI  G +      +G KTG+F DQR NR  + +  + G  VLD+ SY GGF + A  +G 
Sbjct: 206 VIENGFSYLADLQEGQKTGWFFDQRPNRAFVADLAR-GRSVLDVYSYAGGFGLLALARGA 264

Query: 231 -EVTAVDLSEKALAVAEENMELNRVKN-YNCMVSNAFDAMKEMIKNNEKFDVVVLDPPAF 288
              T VD S++ L +A++      +        +  F  +++     ++F VVV DPPAF
Sbjct: 265 TSATLVDRSDQGLLLAQQAAATAGLGGALTTHKAEGFAYLEQAEHEGKRFGVVVCDPPAF 324

Query: 289 TDSSKDIKNALNAYNSMNYLGLKLAK--RILVTCSCSHHIDRESFKHTIVSSSLRAKKEI 346
             + KD  +    Y  +  L   L +    L   SCSHH+  + F+        +A +  
Sbjct: 325 AKTRKDQASGAKGYRKVARLAAALVEPGGFLFVASCSHHMPIDRFQDETAHGIAQAGRTG 384

Query: 347 RQIGSYRTQAPDHIITMANKDLEYLKCL 374
           R + S     PDH +     +  YLK L
Sbjct: 385 RILRS-GGAGPDHPVHPDLAESAYLKTL 411