Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 305 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 51.6 bits (122), Expect = 3e-11
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 5/120 (4%)

Query: 171 VISEGNAKFNVNM-KGHKTGFFLDQRDNRIDLENYVKPGDKVLDICSYTGGFAVHAGIKG 229
           ++SE  A+F +++ +G   G FLD R  R  ++      + VL++ +YT GF+V A ++G
Sbjct: 102 LVSENGARFQIHLLRGQNHGLFLDMRAGRAWVKANAAQAN-VLNLFAYTCGFSVMA-LQG 159

Query: 230 G--EVTAVDLSEKALAVAEENMELNRVKNYNCMVSNAFDAMKEMIKNNEKFDVVVLDPPA 287
           G  +V  +D+S+ ALA+ ++N  LN   +    + +        +     +D+++ DPP+
Sbjct: 160 GADQVVNIDMSKGALAIGKQNHLLNEFPHGARFLGHDIFKSWGKLTKMGPYDLIIADPPS 219