Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 711 a.a., 23S rRNA m(2)G2445 methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score = 80.5 bits (197), Expect = 1e-19
 Identities = 60/213 (28%), Positives = 112/213 (52%), Gaps = 16/213 (7%)

Query: 93  DTYRMIYAEAD--------YLPSIILDKYNKIASIQ--ISSKIMDNYSDLIFECISEITD 142
           D+YR+  A+          YL  +++ +Y+   SI   ++ + + +   ++ + I    D
Sbjct: 425 DSYRLYDADIPEYNVAVDIYLDHVVIQEYSAPKSIPEAVTKRRLTDVLLVLPQAIGVDPD 484

Query: 143 VETMYVQSGKKGSDVKTKIFGDKSQIETVISEGNAKFNVNMKGH-KTGFFLDQRDNRIDL 201
              +  +  +KG++   K+  D +++E V +E  AKF +N+K +  TG FLD R  R  L
Sbjct: 485 KIILKTRERQKGTNQYQKL--DATKLELVTTEYGAKFKLNLKDYLDTGLFLDHRLTR-KL 541

Query: 202 ENYVKPGDKVLDICSYTGGFAVHAGIKGGE-VTAVDLSEKALAVAEENMELNRVKNYNCM 260
                 G  VL++ +YTG  +VHA + G + VT VD+S   L  A++N ELN +K     
Sbjct: 542 VGEKSKGRDVLNLFAYTGSASVHAALGGAKSVTTVDMSNTYLNWAQDNFELNGLKGKQYQ 601

Query: 261 VSNAFDAMKEMIKNNEKFDVVVLDPPAFTDSSK 293
                D ++ +   ++++D++ +DPP F++S +
Sbjct: 602 FIQG-DCLQWIDDCDQQYDLIFIDPPTFSNSKR 633