Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 380 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 64.7 bits (156), Expect = 4e-15
 Identities = 73/294 (24%), Positives = 126/294 (42%), Gaps = 39/294 (13%)

Query: 90  NYKDTYRMIYAEADYLPSIILDKYNKIASIQISSKIM--DNYSDLIFECISEITDVETMY 147
           ++ D +R+ +   + +  + +D+Y     +Q   + +  +  ++++     E+ D+  +Y
Sbjct: 69  DHTDCFRVFHGTVEGISGLNVDRYGDTWLVQSFHQTLTVEELAEIVAVLTQEM-DLPVVY 127

Query: 148 VQSGKKGSDVKTKIFGDKSQI---ETVISEGNAKFNVNMK--GHKTGFFLDQRDNRIDLE 202
                  S V   +  +   I   E V+ E   KF   ++  G     FLD R  R    
Sbjct: 128 NDRSAGHSRVLNALSPELDDIACAELVMQENGIKFTTKLRHEGQDPLLFLDMRIGR---- 183

Query: 203 NYVKPGDK---VLDICSYTGGFAVHAGIKGGE-VTAVDLSEKALAVAEENMELNRVKNYN 258
            YV+   +   VL++ SYT G    A + G E V  VD S  ALA    N ELN+V    
Sbjct: 184 EYVRAHSQDKTVLNLFSYTCGIGTAAAMGGAERVVNVDFSSFALAAGRTNAELNQVSEVC 243

Query: 259 CMV-SNAFDAMKEMI------KNNEK-----------FDVVVLDPPAFTDSSKDIKNALN 300
             V S+AF A++++       + N K           FD+V LDPP +  S+  I + +N
Sbjct: 244 EFVQSDAFPALRQLAGLSVGGRRNHKLPSYPKLAQTQFDLVFLDPPRYAKSAFGIVDLVN 303

Query: 301 AYNSMNYLGLKLAKR--ILVTCSCSHHIDRESFKHTIVSSSLRAKKEIRQIGSY 352
            Y  +    L   K    +V C+    +DR  +  ++V      +K+ R +  Y
Sbjct: 304 DYQGLFKPALLSTKTGGTIVCCNNVAKVDRRDWFDSLVRC---VEKQGRSVTEY 354