Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 400 a.a., 23S rRNA (cytosine(1962)-C(5))-methyltransferase from Klebsiella michiganensis M5al

 Score =  149 bits (377), Expect = 1e-40
 Identities = 108/371 (29%), Positives = 198/371 (53%), Gaps = 21/371 (5%)

Query: 20  IYKNAIVNKDDFSKTEEIVDITYN-GNFVAKALYDPKFPL-IKILTRENEE-IDKDFFFK 76
           I+  A+   +  +++ E +DI  + G ++A+  Y P   +  ++ + + +E ID  FF +
Sbjct: 26  IFSGAVARMEGKARSGETIDIVDSQGKWLARGAYSPSSQIRARVWSFDRDEAIDNAFFER 85

Query: 77  RINNANNYRTDIL--NYKDTYRMIYAEADYLPSIILDKYNKIASIQISSKIMDNYSDLIF 134
           R+  A  +R  +   +  D+YR+I  E+D LP + +D++     +Q+ S   +     I 
Sbjct: 86  RLQQAQTWREWLAARDGLDSYRLIAGESDGLPGVTIDRFGDFFVLQLLSAGAEYQRAAIV 145

Query: 135 ECISEITDVETMYVQSG-----KKGSDV-KTKIFGDKSQIETVISEGNAKFNVNMKG-HK 187
             +  +     +Y +S      K+G ++ +  + G+       I+E   +  V+++G HK
Sbjct: 146 SALQTLFPNCAIYDRSDVAVRKKEGLELAQGPVVGELPPALLPITEHGMQLLVDIQGGHK 205

Query: 188 TGFFLDQRDNRIDLENYVKPGDKVLDICSYTGGFAVHAGIKGG--EVTAVDLSEKALAVA 245
           TG++LDQRD+R+    YV    +VL+  SYTGGFA+ A + GG  +V +VD S++AL VA
Sbjct: 206 TGYYLDQRDSRLATRRYVAD-KRVLNCFSYTGGFAISA-LMGGCRQVVSVDTSQEALDVA 263

Query: 246 EENMELNRV--KNYNCMVSNAFDAMKEMIKNNEKFDVVVLDPPAFTDSSKDIKNALNAYN 303
            +N+ELN++       +  + F  +++     EKFDV+V+DPP F ++   +  A   Y 
Sbjct: 264 RQNVELNKLDLSKAEFIRDDVFKLLRKYRDAGEKFDVIVMDPPKFVENKSQLMGACRGYK 323

Query: 304 SMNYLGLKLAK--RILVTCSCSHHIDRESFKHTIVSSSLRAKKEIRQIGSYRTQAPDHII 361
            +N L ++L     IL+T SCS  +  + F+  +  ++L A ++++ I  +R QA DH +
Sbjct: 324 DINMLAIQLLNPGGILLTFSCSGLMTTDLFQKIVADAALDAGRDVQFIEQFR-QAADHPV 382

Query: 362 TMANKDLEYLK 372
                +  YLK
Sbjct: 383 IATYPEGLYLK 393