Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 396 a.a., SAM-dependent methyltransferase (RefSeq) from Shewanella sp. ANA-3

 Score =  169 bits (429), Expect = 9e-47
 Identities = 127/385 (32%), Positives = 201/385 (52%), Gaps = 19/385 (4%)

Query: 11  QSLKNFSNIIYKNAIVNKDDFSKTEEIVDIT-YNGNFVAKALYDPKFPL-IKILTRENEE 68
           +SL+     ++ N I N     +  E VD+  ++G+++ +  + P+  + ++I T + EE
Sbjct: 13  KSLERRHPWVFSNGIHNVKGKPEAGETVDVVAHDGHWLGRGAWSPESQIQVRIWTFDREE 72

Query: 69  -IDKDFFFKRINNANNYRTDILNYKDT--YRMIYAEADYLPSIILDKYNKIASIQISSKI 125
            ID++FF +RI  A   R D++  +    YR+I AE+D LP I +DKY  +   Q+ S  
Sbjct: 73  EIDREFFKRRILRAQAGRDDLIREQGLTGYRLIAAESDGLPGITIDKYANVLVCQLLSMG 132

Query: 126 MDNYSDLIFECISEITDVETMY----VQSGKKGSDVKTK--IFGDKSQIETVISEGNAKF 179
            D + D I + ++E+     +Y    V S KK     T   + G   ++  +I E   K 
Sbjct: 133 ADVWRDTIVDVLAELYPDCAIYERSDVDSRKKEGLASTMGLLHGTLPEMPVIIEENGIKI 192

Query: 180 NVNM-KGHKTGFFLDQRDNRIDLENYVKPGDKVLDICSYTGGFAVHAGIKGG-EVTAVDL 237
            V++ KGHKTGF+LDQRDNR     +VK G  VL+   YTG F ++A   G   +  VD+
Sbjct: 193 AVDVTKGHKTGFYLDQRDNRAMAARFVK-GKSVLNCFCYTGTFGLYAANAGAASIENVDV 251

Query: 238 SEKALAVAEENMELNRVKNYNCMVSNA--FDAMKEMIKNNEKFDVVVLDPPAFTDSSKDI 295
           S  AL  A  NM +N + + N   + A  F  +++     + FDV+VLDPP F D+   +
Sbjct: 252 SALALDTARLNMRVNGLNDDNVHYNEADVFKLLRQYRDEGKTFDVIVLDPPKFADNKSQL 311

Query: 296 KNALNAYNSMNYLGLKLAK--RILVTCSCSHHIDRESFKHTIVSSSLRAKKEIRQIGSYR 353
             A   Y  +N + L+L     +L+T SCS  +  + F+  +  ++L AK+EI+ I    
Sbjct: 312 NGACRGYKDINMIALQLLNPGGVLLTFSCSGLMPADLFQKIVADAALDAKREIQFI-ERL 370

Query: 354 TQAPDHIITMANKDLEYLKCLFFNV 378
           +QA DH I  A  +  YLK L   V
Sbjct: 371 SQASDHPIGSAFPEGFYLKGLVARV 395