Pairwise Alignments

Query, 467 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 405 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

 Score = 44.3 bits (103), Expect = 8e-09
 Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 15/208 (7%)

Query: 44  YSSPDYDPEEVLNGVKLILGNSVQIVGGSSKFQICGNKFLENGVSVGILGSKYFNTGMGV 103
           Y + +YD + + + +K      + I+G SS   +       +  +VGI+G  Y +     
Sbjct: 45  YFTEEYDAQLLSSMLKAAFPG-IPIIGCSSCRGVMTQDGYFSNPAVGIMGI-YDSPQAAY 102

Query: 104 GLG-ISINPKESGKKAVKDAVENL-------GMLPKLLYVITDFCKCEEQVLKGIIEELG 155
           G   IS+       + +  A++N        G LP L+ ++      EE +++GI  + G
Sbjct: 103 GTALISLCDNRPIPELIDQAIDNALESADRTGELPSLV-LLHATPGIEEVLIEGIDNKFG 161

Query: 156 VTIPIFGGVSSDDFEFEHTYQYGNDVYLDSIVCVAFGGDIVPKIS-YNNYEYGENSGKLE 214
             +PI GG ++D+F  ++   +  +   D  + +     + P  S +  +  G +  +  
Sbjct: 162 SQVPIIGGSAADNFISQNWSIFTQEGATDKGIALQL---MFPSQSVFGGFSAGYSPTEFS 218

Query: 215 NIITKSEKRSIEEIGNISAVKRYIEISG 242
            +ITK++ R IEEI N SA   Y E  G
Sbjct: 219 GVITKAKGRVIEEIDNESASGLYKEWIG 246