Pairwise Alignments

Query, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

Subject, 951 a.a., BarA sensory histidine kinase (= VarS = GacS) from Pseudomonas fluorescens FW300-N2E2

 Score =  160 bits (404), Expect = 3e-43
 Identities = 105/334 (31%), Positives = 170/334 (50%), Gaps = 30/334 (8%)

Query: 325 GLLIALIVSYLINRGIIKPLEQLKQGAEWVSNGRYDQKVIVDSDDEFGELAKAFNKMATQ 384
           GL +  +++  + R I +PL Q+KQ    + +G  + ++      E  ELA   N+MA+ 
Sbjct: 214 GLCLTGLLALRMGRTINRPLSQIKQAVAQLKDGHLETRLPPLGSQELDELASGINRMAST 273

Query: 385 INISDDKLKKHAE------------------ELKISYNELKELDKLKSELIAVVSHELRT 426
           +  + ++L+   +                  EL ++  E  E  ++KSE +A +SHE+RT
Sbjct: 274 LQNAQEELQHSIDQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRT 333

Query: 427 PLTSIKGYVELVLDGTMGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYR 486
           PL  I G+  L+       +   Q   L   + +   L  +I  +LD SKIE G+L +  
Sbjct: 334 PLNGILGFTHLL---QKSELTPRQLDYLGTIEKSADSLLGIINEILDFSKIEAGKLVLDS 390

Query: 487 EKVNLRSIVCDVIEYLKPLATEKNIKLNKEV---EDIAIEADKDRITQVLTNLIENAIKF 543
              NLR ++ D +  L P A  K ++L   V     +++  D  R+ Q+LTNL+ NAIKF
Sbjct: 391 IPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKF 450

Query: 544 SPANESILVSGVLEDEH-----IHLKVTDRGAGIPKKDMEKIFNRFYQVDSSTKRKKGGS 598
           +    +I+   +LEDEH     + + + D G G+  +D+  +F  F Q D+S  R+ GG+
Sbjct: 451 TREG-TIVARAMLEDEHEDSVQLRISIQDTGIGLSNQDVRALFQAFSQADNSLSRQPGGT 509

Query: 599 GLGLAVCKSIVEAHKGSIWVESELGKGSTFHIIL 632
           GLGL + K +VE   G I V+S  G+GS F I L
Sbjct: 510 GLGLVISKRLVEQMGGEIGVDSTPGEGSEFWISL 543