Pairwise Alignments

Query, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

Subject, 986 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  161 bits (408), Expect = 1e-43
 Identities = 86/231 (37%), Positives = 141/231 (61%), Gaps = 1/231 (0%)

Query: 405 ELKELDKLKSELIAVVSHELRTPLTSIKGYVELVLDGTMGAINDSQKKCLQVADDNIVRL 464
           E K ++++KSEL+++VSHELRTPLTSI G + L++ G +G  + S ++ L +A  N +RL
Sbjct: 748 ERKRIERMKSELVSIVSHELRTPLTSISGALGLIVGGALGEPSPSMRQMLDIAHQNSLRL 807

Query: 465 RRLIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLATEKNIKLNK-EVEDIAIE 523
            RL++ +LD+ K+  G++ +     +L+  +   +   +  A +  ++L       + + 
Sbjct: 808 GRLVDDLLDMDKLVAGKMALALRAHSLQVQLQLAVGANQGYAAQHRVQLELLPTPSLQLM 867

Query: 524 ADKDRITQVLTNLIENAIKFSPANESILVSGVLEDEHIHLKVTDRGAGIPKKDMEKIFNR 583
           AD DR+ QVL NLI NA+KFSP + ++ + G    + + + V D+G GI  +   +IF +
Sbjct: 868 ADDDRLQQVLANLISNAVKFSPQDGTVRLGGERRGDWVRIWVRDQGPGIAPEFRARIFQK 927

Query: 584 FYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIILPI 634
           F Q DSS  R+KGG+GLGLA+ K ++E   G I  +SE G G+ F   LP+
Sbjct: 928 FSQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWCELPL 978