Pairwise Alignments

Query, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

Subject, 1239 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  157 bits (396), Expect = 4e-42
 Identities = 96/266 (36%), Positives = 151/266 (56%), Gaps = 9/266 (3%)

Query: 379 NKMATQINISDDKLKKHAEE-LKISYNELKELDKLKSELIAVVSHELRTPLTSIKGYVEL 437
           ++   Q  I D   +K AE  L+   ++L   ++ KSE +A +SHELRTPL SI    + 
Sbjct: 569 DEQLVQAVIIDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQ 628

Query: 438 VLDGTMGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLRSIVCD 497
           +     G +N+ Q +   +       L +LI  +LDL+KIE G +++  E +NLR ++ +
Sbjct: 629 LRQNGAGNLNEKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLREMLTE 688

Query: 498 VIEYLKPLATEKNIKLNKEVE---DIAIEADKDRITQVLTNLIENAIKFSPANESILVSG 554
               L P+A +K + L  EV+    + + +D+ R+ Q+L NL+ NA+KF+   E  L++ 
Sbjct: 689 QQTSLGPMAEQKGLLLKIEVDADVPVTLNSDRARLQQILRNLLTNALKFTEQGEVELLAS 748

Query: 555 VLEDEH-----IHLKVTDRGAGIPKKDMEKIFNRFYQVDSSTKRKKGGSGLGLAVCKSIV 609
               E      + L+V D G GI K   E+IF  F Q+D S  R  GG+GLGLA+ + +V
Sbjct: 749 CRSAEDGSGQTLQLQVRDSGIGIAKDQHERIFQAFQQIDGSISRHYGGTGLGLAITRQLV 808

Query: 610 EAHKGSIWVESELGKGSTFHIILPIS 635
           E   G + VESELG+G+TF ++LPI+
Sbjct: 809 EVLGGQVTVESELGQGATFTVVLPIA 834