Pairwise Alignments

Query, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

Subject, 856 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  151 bits (382), Expect = 1e-40
 Identities = 79/231 (34%), Positives = 137/231 (59%), Gaps = 1/231 (0%)

Query: 405 ELKELDKLKSELIAVVSHELRTPLTSIKGYVELVLDGTMGAINDSQKKCLQVADDNIVRL 464
           E K ++++K++ ++ VSHELRTPLTSI G + L++ G +G+   S ++ L++A  N +RL
Sbjct: 487 ERKRVEQMKNDFVSTVSHELRTPLTSISGALGLIVGGALGSAPASMQQMLEIAYRNSLRL 546

Query: 465 RRLIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLATEKNIKLNKEVE-DIAIE 523
             LI  +LD+ KI  G++     + +L  ++ + +   + L  +  I+ + +   D+ + 
Sbjct: 547 GHLINDLLDMEKIAAGKMSFELREHSLGDLLEESLASNQALCEQHGIRCSLDHPVDVLVW 606

Query: 524 ADKDRITQVLTNLIENAIKFSPANESILVSGVLEDEHIHLKVTDRGAGIPKKDMEKIFNR 583
            D  R+ QVL N + NA+KF+P    I +   L    + + VTD+G GIP+    ++F +
Sbjct: 607 VDGMRLQQVLGNFLSNAVKFTPQGGEIRLHSSLRGPRVRISVTDQGPGIPEAFRSRVFEK 666

Query: 584 FYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIILPI 634
           F Q D+S  R+K G+GLGLA+ K ++E   G++  +   G+G+TF   LPI
Sbjct: 667 FAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCPPGQGTTFWCELPI 717