Pairwise Alignments

Query, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

Subject, 677 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

 Score =  178 bits (452), Expect = 6e-49
 Identities = 169/617 (27%), Positives = 298/617 (48%), Gaps = 82/617 (13%)

Query: 79  NTITSLKNNNTAELKTLAISY---KNTSAPDFVV----FFDGQGNVVARSNSDVTGDNSY 131
           N++T L+      ++  A SY   K    P+ +     +   Q N            +S 
Sbjct: 67  NSVTLLQQKQANHVRAFAESYDFRKRLQEPETLSTLPRWVQNQKNRYGLDFLSFERVDSL 126

Query: 132 EDLFKKVVNSTGYTSIEVLDKDSIKYENVGELVNIDI-KGTEDSINYSDSVQDSAMALVS 190
           E  F+ +  +   +  +VL  D +      E ++ D+ K  +  I  S  ++   +   +
Sbjct: 127 EQKFRYLDLTKRESFFDVLSADEL------EKLDPDLAKQAQIPILNSQQIETRGLVSRT 180

Query: 191 IEPIYDKNGKLLGAAMAADILNKDYSIVDTVKDA----------SKDATTIFLDGVRVST 240
           + P+ +  G+++G      +LN   ++VD ++D                T+FLD +RVST
Sbjct: 181 VIPVRNDFGEIIGFLDGGLLLNNSTTLVDQIRDLIYPSHQDQLRPTGTLTLFLDDLRVST 240

Query: 241 NV----QDNGGRAIGTLVSEEVYNHVVLDGKTYYGRAFVVNEWYLTAYEPIYDSDNKIIG 296
           NV      + GRAIGT VS EV+N V+  G+ +   A+V + WY+TAYEPI D  +  IG
Sbjct: 241 NVPLDSNIHAGRAIGTRVSSEVFNQVLKGGQQWVNLAYVYDAWYITAYEPIRDQYHNEIG 300

Query: 297 MLFVGTPESKFLALQADVRNQTFVVGLIGLLIALIVSYLINRG---IIKPLEQLKQGAEW 353
           ML+ G     F  L+A V N    VG+I L + +I    + RG   + +P+E++ +  + 
Sbjct: 301 MLYTGYLMWPF--LKAYVTN-ILEVGIITLFLLVISGLFVYRGSRDLFRPIERIHRVVKM 357

Query: 354 VSNGRYDQ--KVIVDSDDEFGELAKAFNKMATQINISDDKLKKHAEELKI---------- 401
           V  G+  +  ++ +D   E  +LAK F+ M  Q+   ++++ + A EL+           
Sbjct: 358 VQLGKNQRIGQIGLDDKHELAQLAKQFDNMLDQLQQRNEEIVQAAHELEAKVQSRTASLQ 417

Query: 402 ---------------SYNELKELDKLKS--ELIAVVSHELRTPLTSIKGYVELVLDGTMG 444
                          + N+L   +KL +  EL A ++HE+  P   I G  EL+    +G
Sbjct: 418 EKTAQLEHHIALLNQTRNKLVVHEKLAALGELTAGIAHEINNPTAVILGNTELI-RFELG 476

Query: 445 AINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKP 504
           A     ++ +      I R+R +  S+L  S+    + E+  + VN   I+ + I  +K 
Sbjct: 477 ADASRVEEEIDAILLQIERIRNITRSLLQYSRQGGVQDEITWQHVN--PIIDESITLVKT 534

Query: 505 LATEKNIKLNKEVE-DIAIEADKDRITQVLTNLIENAI-------KFSPANESILVSGVL 556
            + +++I+   E++   ++E ++ ++ Q+L NL  NAI       + +  +E  +  G  
Sbjct: 535 GSKKRDIEFVLELKAHNSVEVNRHQLLQILVNLQMNAIHAMNGKGRITIRSEDWVEEGQN 594

Query: 557 EDEHIHLKVTDRGAGIPKKDMEKIFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSI 616
               IH++  D+G GI  +++++IF+ FY    +TKR+  G+GLGL+V +S++    G I
Sbjct: 595 RGAVIHIE--DQGCGIKPENLKRIFDPFY----TTKRE--GTGLGLSVSQSLLSQSGGEI 646

Query: 617 WVESELGKGSTFHIILP 633
            V+SELG GSTF I LP
Sbjct: 647 KVQSELGVGSTFSIFLP 663