Pairwise Alignments

Query, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

Subject, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  175 bits (443), Expect = 1e-47
 Identities = 116/372 (31%), Positives = 194/372 (52%), Gaps = 13/372 (3%)

Query: 278 EWYLTAYEPIYDSDNKIIGMLFVGTPESKFLALQADVRNQTFVVGLIGLLIALIVSYLIN 337
           E  + AY PI  +   I   L V  PE +  A    +        L  +++ +I S+ ++
Sbjct: 319 EQIIAAYAPI--NLKNIHWALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHYLS 376

Query: 338 RGIIKPLEQLKQGAEWVSNGRYDQKVI-VDSDDEFGELAKAFNKMATQINISDDKLKKHA 396
             I  PL +L   AE VS G  D+ +I  +  DE G LA +F +M   I      +K   
Sbjct: 377 NFITSPLLKLTWAAERVSAGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQN 436

Query: 397 EELKISY-------NELKELDKLKSELIAVVSHELRTPLTSIKGYVELVLDGTMGAINDS 449
           +EL+ +        +EL+  +KLK E +A  SHELRTPL  + G  E ++ G  G I+ +
Sbjct: 437 KELESNLLIIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAA 496

Query: 450 QKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLATEK 509
            K  L +   +  RL  L++ +LD  K+  G L++ R  V+L S    V+E    L  +K
Sbjct: 497 HKYQLDIIISSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKK 556

Query: 510 NIKLNKEVED--IAIEADKDRITQVLTNLIENAIKFSPANESILVSGVLEDEHIHLKVTD 567
            +++  +V +  + + AD  R+ QVL NLI NAIK++ +   I++S    D+ + ++V D
Sbjct: 557 TLRIINQVSEQPVWVSADPQRLEQVLYNLIGNAIKYT-SEGKIVISATYIDDKVRVQVVD 615

Query: 568 RGAGIPKKDMEKIFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGST 627
            G GIP + +E IF    Q      R + G+GLGL++ + ++E   G+++V S+   G+T
Sbjct: 616 TGQGIPAEQLEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTT 675

Query: 628 FHIILPISAKDQ 639
           F   LP++++++
Sbjct: 676 FSFTLPLASEEE 687