Pairwise Alignments

Query, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

Subject, 977 a.a., periplasmic sensor hybrid histidine kinase from Synechococcus elongatus PCC 7942

 Score =  159 bits (403), Expect = 4e-43
 Identities = 112/345 (32%), Positives = 184/345 (53%), Gaps = 20/345 (5%)

Query: 307 FLALQADVRNQTFVVGLIGLLIALIVSYLINRGIIKPL----EQLKQGAEWVSNGRYDQK 362
           F  L+A  +   ++  L+G++IA ++  +  RG    L    EQL   A+ +++G+  Q+
Sbjct: 358 FRRLEAIQQRSLYIQLLLGVIIA-VLGAIAARGWAAHLGMRIEQLAHAADAMASGQLQQQ 416

Query: 363 VIVDSDDEFGELAKAFNKMAT-----------QINISDDKLKKHAEELKISYNELKELDK 411
           +     DE   LA+AFN+MA            ++      L++  + L+ +  + +  ++
Sbjct: 417 IPTSGRDELTVLAQAFNRMAVTLRELLVSLEHRVQERTAALRETNDRLEQAREQAEAANQ 476

Query: 412 LKSELIAVVSHELRTPLTSIKGYVELVLDGTMGAIN-DSQKKCLQVADDNIVRLRRLIES 470
            KS  +A +SHELRTPL +I GY E++++     I  +      +  ++    L  LI S
Sbjct: 477 AKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKINNAGKHLLELINS 536

Query: 471 MLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLATEKNIKLNKEVE-DIAI-EADKDR 528
           +LDLSKIE G +E+Y E  +L  ++  V   +KPL  +   +L  +   DI +  AD  +
Sbjct: 537 ILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCPADIGLMTADVTK 596

Query: 529 ITQVLTNLIENAIKFSPANESILVSGVLEDEHIHLKVTDRGAGIPKKDMEKIFNRFYQVD 588
           + Q L NL+ NA KF+    +I +    + + +  KV D G G+  + +++IF  F Q D
Sbjct: 597 LRQTLLNLLSNASKFTHQG-TIQLQVAAQGDQVVFKVVDSGIGMSPEQIDRIFEAFAQAD 655

Query: 589 SSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIILP 633
            ST RK GG+GLGL++ +  +E   G I VES LG+GSTF I LP
Sbjct: 656 DSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLP 700



 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 14/99 (14%)

Query: 217 IVDTVKDASKDATTIFL------DGVRVSTNVQDNGG-RAIGTLV-------SEEVYNHV 262
           ++DTV        TIF       D +RV+T V +    RAIGT +               
Sbjct: 134 VIDTVSRQMGGTVTIFQRINDRGDMLRVATTVPNQDKQRAIGTYIPVTNPSGDPNPVIAA 193

Query: 263 VLDGKTYYGRAFVVNEWYLTAYEPIYDSDNKIIGMLFVG 301
           VL G+TY G A++VN+WY+  Y+P+ D+  ++IGM++ G
Sbjct: 194 VLKGQTYRGPAYIVNDWYIAIYQPLKDAQGRVIGMIYAG 232