Pairwise Alignments

Query, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

Subject, 713 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  175 bits (443), Expect = 7e-48
 Identities = 175/690 (25%), Positives = 314/690 (45%), Gaps = 85/690 (12%)

Query: 13  KLIIYSIITALIPIVMLGAVSTDTINTEMTKQAQEKINDDLNTAESVVNLKLDKISSLNK 72
           +++I +++  L+ +V L  ++     +   KQ   K+  DL  A + +    +K  +  +
Sbjct: 22  RILILTLLPILLTLVSLVFITIYWNISYTGKQLFMKVKADLTVASNTLISVQEKQENQLE 81

Query: 73  YIISN---DNTITSLKNNNTAELKTLAISYKNTSAP---DFVVFFDGQGNVVARSNSDVT 126
            + ++    N    L  ++ A    LA   K   A    DF+            S S+  
Sbjct: 82  LVRASWEFQNEFRDLDTDSKAARTQLAELLKQKQAELDLDFLRLI---------SVSEAA 132

Query: 127 GDNSYEDLFKKVVNSTGYTSIEVLDKDSIKY--ENVGELVNIDIKGTEDSINYSDSVQDS 184
            D     +  K+ ++  ++ + VL    +     N+ +   I +  T  S   S  V+  
Sbjct: 133 QDPDLRVMLPKIQDNQPFSGLMVLQPQRLARLAPNLEQEAVITLVDTPRSQKPSKDVEKR 192

Query: 185 AMALVSIEPIYDKNGKLLGAAMAADILNKDYSIVDTVKDASKD----------ATTIFLD 234
            M   S+ PI   +G +        +LN+D  IVD ++D   D            TIFLD
Sbjct: 193 GMLSRSLLPILGSDGTVGWYLDGGILLNRDIRIVDHIRDLVYDKGTLPERSIGTVTIFLD 252

Query: 235 GVRVSTNV--------QDNGGRAIGTLVSEEVYNHVVLDGKTYYGRAFVVNEWYLTAYEP 286
             R+STNV         +  GRA+G+LVSEEV   V++ G  +  RAFV N+W+++AY P
Sbjct: 253 NTRISTNVPLNFFPQDSEKRGRALGSLVSEEVRQKVLVQGLLWVDRAFVYNDWFISAYAP 312

Query: 287 IYDSDNKIIGMLFVGTPESKFLALQADVRNQTFVVGLIGLLIALIVSYLINRG---IIKP 343
           + D   + IGM++ G  ES F+    +       +G I +L+ L+   L+ RG   +++P
Sbjct: 313 LKDIRGERIGMIYTGFSESPFI---HNYLLNIIELGTILMLVLLVSGLLVYRGAYSLLQP 369

Query: 344 LEQLKQGAEWVSNGRYDQ--KVIVDSDDEFGELAKAFNKMATQINISDDKLKKHAEELKI 401
           +E++    + V +GR  +   + ++ D+E   LA+ F++M   +   + +++  AE+L++
Sbjct: 370 IERIHHVVKAVQSGRNLRIGSLGLERDNELANLAEQFDRMLDLLQRRNSQIQAAAEQLEV 429

Query: 402 SYNE-------------------------LKELDKLKS--ELIAVVSHELRTPLTSIKGY 434
              E                         L   +KL +  EL A ++HE+  P   I G 
Sbjct: 430 KVEERTRSLQEKTEELQRNVALLNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGN 489

Query: 435 VELVLDGTMGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLRSI 494
           +EL L   +G   +  ++ + +  + + R+  +I S+L  S+   GE     E   L  I
Sbjct: 490 MEL-LKSELGDKAEDVEEEIDIVIEQVGRISTIIRSLLQYSR--PGEFNAPLEMHQLTPI 546

Query: 495 VCDVIEYLKPLATEKNIKLNKEVE-DIAIEADKDRITQVLTNLIENAIKFSPANESILV- 552
           V ++   ++    ++ + L +++     IE ++ ++ QVL NL+ NA         I + 
Sbjct: 547 VEEMAILVRHSIKKQEVVLIQDLNASYPIEVNRPQLLQVLINLVVNAAHAMDGQGRIWIR 606

Query: 553 --SGVLEDEHIHLK--VTDRGAGIPKKDMEKIFNRFYQVDSSTKRKKGGSGLGLAVCKSI 608
               V   E I +K  V D G GIP++ + +IF+ FY        ++ G+GLGL++   I
Sbjct: 607 TYDWVQGGEPIGVKIEVEDEGKGIPEEQLGRIFDPFYTT------RQDGTGLGLSLSYGI 660

Query: 609 VEAHKGSIWVESELGKGSTFHIILPISAKD 638
           ++   G+I V S +GKG+ F I L   A D
Sbjct: 661 IKRIGGTIEVSSTVGKGTLFTIGLYHKAID 690