Pairwise Alignments

Query, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

Subject, 933 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella loihica PV-4

 Score =  155 bits (393), Expect = 6e-42
 Identities = 99/341 (29%), Positives = 176/341 (51%), Gaps = 28/341 (8%)

Query: 319 FVVGLIGLLIALIVSYLINRGIIKPLEQLKQGAEWVSNGRYDQKVIVDSDDEFGELAKAF 378
           F++ LIG+ + L+ ++ + + +  P+ ++ +    +  G+ D +V  +   E   L +  
Sbjct: 191 FIIVLIGVQLNLLFTFRLVKNVTHPITEMVRVVAKIREGKLDTRVDGNLIGELDLLKRGI 250

Query: 379 NKMATQINISDDKLKKHAE------------------ELKISYNELKELDKLKSELIAVV 420
           N MA  ++   ++++++ +                  EL ++     E  ++KSE +A +
Sbjct: 251 NAMAGSLSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEASRIKSEFLANM 310

Query: 421 SHELRTPLTSIKGYVELVLDGTMGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERG 480
           SHELRTPL  + G+ + +L   + A   SQ+  ++  + +   L  +I  +LD SK+E G
Sbjct: 311 SHELRTPLNGVIGFAKQLLKTPLHA---SQQDYIKTIEKSATNLLGIINDILDFSKLEAG 367

Query: 481 ELEMYREKVNLRSIVCDVIEYLKPLATEKNIKLNKEVEDIA---IEADKDRITQVLTNLI 537
           ++E+      LR ++ D I  L   A EK+++L  ++E      +  D  R++QV+TNL+
Sbjct: 368 KMELENMPFALREVIDDTISLLANSAKEKDLELVVDIEPSINDNVSGDALRVSQVITNLV 427

Query: 538 ENAIKFSPAN----ESILVSGVLEDEHIHLKVTDRGAGIPKKDMEKIFNRFYQVDSSTKR 593
            NAIKF+ +     +  L S   E  ++  ++TD G GI K    ++F  F Q DSS  R
Sbjct: 428 GNAIKFTDSGSVHLKMRLTSEEAEKVNVRCEITDTGIGIDKPHQAQLFQAFGQADSSISR 487

Query: 594 KKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIILPI 634
           + GG+GLGL + K ++    G I   S  GKGSTF   LP+
Sbjct: 488 RFGGTGLGLIITKRLINRMGGQIGCISAPGKGSTFWFTLPL 528