Pairwise Alignments

Query, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

Subject, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis JJ

 Score =  236 bits (602), Expect = 3e-66
 Identities = 149/476 (31%), Positives = 245/476 (51%), Gaps = 40/476 (8%)

Query: 8   KRLGTKLIIYSIITALIPIVMLGAVSTDTINTEMTKQAQEKINDDLNTAESVVNLKLDKI 67
           K++GTK++++ I+ A+IP++++G VSTD I+ EM  Q +  ++ +L   E  +N    + 
Sbjct: 6   KKIGTKILVFMILCAVIPLMIVGGVSTDKISNEMEIQGENSVDFNLKILEETINNIQSEF 65

Query: 68  SSLNKYIISNDNTITSLKNNNTAELKTLAISYKNTSAPDFVVFFDGQGNVVARSNSDVTG 127
            +   Y  + D    ++ NN+   L   A + K +S  D + F D  GN++  S+SD T 
Sbjct: 66  ETTTDYTANLDVVSDAISNNDNGILLNFAENMKESSEVDLIAFTDKDGNII--SSSDNTQ 123

Query: 128 DNSYEDLFKKVVNSTGYTSIEVLDKDSIKYENVGELVNIDIKGTEDSINYSDSVQDSAMA 187
            N    + K + N    + + +   ++ KY +                 Y     + A+A
Sbjct: 124 TNLKPIVSKLLGNEVQSSFLIISGAEASKYSD-----------------YKVDKTNDALA 166

Query: 188 LVSIEPIYDKNGKLLGAAMAADILNKDYSIVDTVKDASKDATTIFLDGVRVSTNVQDNGG 247
           L ++ P+Y+ +GKL+G+    DI+NKD   VD VK  + +  TIFL  VR+ST VQ NG 
Sbjct: 167 LCAVAPVYN-SGKLVGSVTLVDIVNKDDQWVDRVKQVTGNEATIFLKNVRISTTVQTNGR 225

Query: 248 RAIGTLVSEEVYNHVVLDGKTYYGRAFVVNEWYLTAYEPIYDSDNKIIGMLFVGTPESKF 307
            A GT  SEEVY    L+ + + G A V+ + Y+T Y PI D +  ++GM+FVGTPE  F
Sbjct: 226 DATGTTASEEVYTKS-LNHQEHVGTATVLGQSYITKYSPIEDIEGNVVGMIFVGTPEGPF 284

Query: 308 LALQADVRNQTFVVGLIGLLIALIVSYLINRGIIKPLEQLKQGAEWVSNGRYDQKVIVDS 367
           LA+   +RNQ  +V + GLL++++++    R I KP+E+LK+G     NG YD K  V +
Sbjct: 285 LAVINGIRNQIIIVAIAGLLLSILIALYTGRKITKPIEELKKGTSEFGNGNYDYKTNVKT 344

Query: 368 DDEFGELAKAFNKMATQINISDDKLKKHAEELKISYNELKELDKLKSELIAVVSHELRTP 427
            DE  EL+ +FN MA  I                  N +K +D  K EL  ++++     
Sbjct: 345 GDELQELSDSFNGMAGNIK-----------------NLMKTMDMDKVELANLLNNVTNVM 387

Query: 428 LTSIKGYVELVLDGTMGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELE 483
               KG  +          N++ +K +  A  N+ +L + +   +DL  I+  ++E
Sbjct: 388 NNVAKG--DFTARADENTENNTLQKAINTAVANVAQLIKDLREEVDLLNIQVQKVE 441



 Score = 25.4 bits (54), Expect = 0.009
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 19/101 (18%)

Query: 372 GELAKAFNKMATQINISDDKLKKHAEELKISYN------------ELKELDKLKSELIAV 419
           G+  K F  +A++I    +++KK  E++  + +             LK  D++   +IA+
Sbjct: 574 GDAGKGFAVVASEIKALAEEIKKSVEDINRTIDGVNRRIEDTMDLGLKGKDEVDKGVIAI 633

Query: 420 VSHELRTPLTSIKGYVELVLDGTMGAINDSQKKCLQVADDN 460
              E+   L  IKG V    D  +  IND  KK  Q A DN
Sbjct: 634 --DEVNDALLRIKGSVN---DAAI-KINDI-KKGAQSATDN 667