Pairwise Alignments

Query, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

Subject, 709 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  180 bits (457), Expect = 2e-49
 Identities = 176/692 (25%), Positives = 319/692 (46%), Gaps = 89/692 (12%)

Query: 13  KLIIYSIITALIPIVMLGAVSTDTINTEMTKQAQEKINDDLNTAESVVNL-------KLD 65
           +++I +++  L+ +V L  ++     +   KQ   K+  DL  AE+ +         +L+
Sbjct: 22  RILILTLLPILLTLVSLVFITIYWNISYTGKQLFMKVKADLAVAENTLQQVQVRQEKQLE 81

Query: 66  KISSLNKYIISND-NTITSLKNNNTAELKTLAISYKNTSAPDFVVFFDGQGNVVARSNSD 124
           ++  +  +   ND   I S    + A + T     K     DF+            S ++
Sbjct: 82  RV--MTSWTFQNDFRPILSGALAHRASIDTFLHEQKKQLDLDFLRLV---------SVAE 130

Query: 125 VTGDNSYEDLFKKVVNSTGYTSIEVLDKDSIKY--ENVGELVNIDIKGTEDSINYSDSVQ 182
              D     +  K+     Y+ + VL ++ +     ++ +  +I +  T  + +    V+
Sbjct: 131 AAADPDLRQILPKIGGMLPYSGLMVLSRERLARIDPDLAQRASIPLLATLRAQSPDKQVE 190

Query: 183 DSAMALVSIEPIYDKNGKLLGAAMAADILNKDYSIVDTVKDASKD----------ATTIF 232
           +  +   S+ PI D  GK+        + N+D  IVD ++D   D            TIF
Sbjct: 191 ERGLLSRSLLPIPDSEGKVAWYLDGGVLFNRDTRIVDHIRDLVYDKGTLPERSIGTVTIF 250

Query: 233 LDGVRVSTNV--------QDNGGRAIGTLVSEEVYNHVVLDGKTYYGRAFVVNEWYLTAY 284
           LD +RVSTNV         ++ GRA+G+LVSEEV   V+  G+ +  RAFV N+W+++AY
Sbjct: 251 LDNIRVSTNVPLHFFPQPNESQGRALGSLVSEEVREKVLNHGELWVDRAFVYNDWFISAY 310

Query: 285 EPIYDSDNKIIGMLFVGTPESKFLALQADVRNQTFVVGLIGLLIALIVSYLINRG---II 341
            P+ D   + +GM++ G  ES F+    +       +G I +L+ LI   L+ RG   ++
Sbjct: 311 APLEDIRGQRVGMIYTGFSESPFI---HNYLLNIIELGTILMLVLLISGLLVYRGAYSLL 367

Query: 342 KPLEQLKQGAEWVSNGRYDQ--KVIVDSDDEFGELAKAFNKMATQINISDDKLKKHAEEL 399
           +P+E++    + V +GR  +   + +D D+E   LA+ F++M   +   + +++  AE+L
Sbjct: 368 QPIERIHHVVQAVQSGRNVRIGALGLDRDNELSNLAEQFDRMLDLLQRRNAQIQAAAEQL 427

Query: 400 KISYNE-------------------------LKELDKLKS--ELIAVVSHELRTPLTSIK 432
           ++   E                         L   +KL +  EL A ++HE+  P   I 
Sbjct: 428 EMKVEERTRSLQDKTLELQRNVALLNETRQQLVTNEKLTALGELTAGIAHEINNPTAVIL 487

Query: 433 GYVELVLDGTMGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLR 492
           G +EL L   +G   +  K+ + +    + R+  +I S+L  S+   GE     E   + 
Sbjct: 488 GNMEL-LRYELGDKAEVVKEEIDLVIQQVGRISTIIRSLLQYSR--PGEFNAPLEMHPIT 544

Query: 493 SIVCDVIEYLKPLATEKNIKLNKEVE-DIAIEADKDRITQVLTNLIENAIKFSPANESIL 551
            I+ +++  ++    ++ + L  E+     ++ ++ ++ QVL NL+ NA         I 
Sbjct: 545 PIIEEMLVLVRHSIQKQEVVLITELNASCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIW 604

Query: 552 V---SGVLEDEHIHLK--VTDRGAGIPKKDMEKIFNRFYQVDSSTKRKKGGSGLGLAVCK 606
           V     V +D  I +K  V D G+GI  + + +IF+ FY        +K G+GLGL++  
Sbjct: 605 VRTYDWVQQDIAIGVKIEVEDEGSGIEPEQLGRIFDPFYTT------RKDGTGLGLSLSY 658

Query: 607 SIVEAHKGSIWVESELGKGSTFHIILPISAKD 638
            I++   G+I V S LGKGS F I L   AK+
Sbjct: 659 GIIKRIGGTIEVSSVLGKGSIFTIGLYHEAKE 690