Pairwise Alignments

Query, 539 a.a., fumarate reductase subunit A from Methanococcus maripaludis S2

Subject, 590 a.a., succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup from Pseudomonas stutzeri RCH2

 Score =  277 bits (709), Expect = 7e-79
 Identities = 197/555 (35%), Positives = 291/555 (52%), Gaps = 48/555 (8%)

Query: 4   DVLIIGGGGAAARAAIEC---GQKNVVIASKGLFGKSGCTVMAEGGYNAVL---NEKDSF 57
           D +I+GGGGA  RAA++    G K  V+    +F     TV A+GG    +   +  D +
Sbjct: 10  DAIIVGGGGAGMRAALQLAQSGHKTAVVTK--VFPTRSHTVSAQGGITCAIASADPNDDW 67

Query: 58  EKHYSDTMKGGGYINDKKLVDVLVKNAPNEFKNLEKFGCIFDRSESAEFAQRPFGGQSFN 117
             H  DT+KG  YI D+  ++ +    P     LE  G  F R+E     QRPFGGQS +
Sbjct: 68  RWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFELEHMGLPFSRTEQGRIYQRPFGGQSKD 127

Query: 118 --------RTCYSGDRTGHEMIAGLMEYLNKFERIKILEDTMAIKLIVDEVEENGKKLKK 169
                   RTC + DRTGH ++  L +   K   +  L +  A+ L+ ++   +G  +  
Sbjct: 128 FGKGGQAARTCAAADRTGHALLHTLYQGNLKNNTV-FLNEWYAVDLVKNQ---DGAVV-- 181

Query: 170 CFGAVFLDLLNGDIYPVYAKSTILATGGAGQIYPITSNPKQKVGDGFAIAYREGVELVDM 229
             G + + +  G+   + +K+T+LATGGAG+IY  T+N     GDG  +A R GV + D+
Sbjct: 182 --GVIAICIETGETVYIRSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDI 239

Query: 230 EMVQFHPTGMLGTGILVTEAVRGEGGILYNKNKERFMKNYDSKRMELSTRDVVAKAIYNE 289
           EM QFHPTG+ G G+LVTE  RGEGG L NK+ ERFM+ Y     +L+ RDVVA+++  E
Sbjct: 240 EMWQFHPTGIAGAGVLVTEGCRGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKE 299

Query: 290 IQEGRGI--DGG-VYLDVTHLEPEVIKEKLETMFSQFK-LVGVDIRKEPMKVAPTAHHFM 345
           I  G G   DG  V L + HL  EV+  +L  +    K    VD    P+ V PT H+ M
Sbjct: 300 ILAGNGCGPDGDHVMLKLDHLGEEVLHSRLPGICELSKTFAHVDPVVAPVPVVPTCHYMM 359

Query: 346 GGIKIN-------EDC---ETNISGLFACGEVA-GGLHGANRLGGNALAETQVFGSIAGR 394
           GGI  N       +D    +T I GLFA GEVA   +HGANRLGGN+L +  VFG  AG 
Sbjct: 360 GGIATNIHGQAITQDANGNDTIIDGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGL 419

Query: 395 NALNYAEEKIDISKVYDS-VEKYIEKLKNTFKGSNSGNNVYSLIDELKNTMWDFVSISRD 453
           +     ++ I+     D+ ++  + +L        +G +V  L  EL+N M ++  + R 
Sbjct: 420 HLEKALKDGIEHRGASDTDLDVALSRLAG-LNERTTGEDVAPLRKELQNCMQNYFGVFRT 478

Query: 454 ----ENGLKTALEKINEIAGKKVLINGVVDFSKK---LELENMVLVSKIVINSALLRKES 506
               + G+   ++    IA  K+        + +   LEL+N++ V++    +A  RKES
Sbjct: 479 GEYMQKGIAQLVDLRQRIANVKISDKSQAFNTARIEALELQNLLEVAEATAIAAENRKES 538

Query: 507 RGAHFRNDYPKTNEE 521
           RGAH R D+ + ++E
Sbjct: 539 RGAHAREDFEERDDE 553