Pairwise Alignments

Query, 539 a.a., fumarate reductase subunit A from Methanococcus maripaludis S2

Subject, 588 a.a., succinate dehydrogenase flavoprotein subunit (RefSeq) from Shewanella amazonensis SB2B

 Score =  301 bits (772), Expect = 3e-86
 Identities = 199/555 (35%), Positives = 304/555 (54%), Gaps = 49/555 (8%)

Query: 4   DVLIIGGGGAAARAAIECGQ--KNVVIASKGLFGKSGCTVMAEGGYNAVLNE--KDSFEK 59
           D ++IG GGA  RAA++  +  K+  + SK +F     TV A+GG    L    +D++E 
Sbjct: 9   DAVVIGAGGAGMRAALQISKEGKSCALLSK-VFPTRSHTVSAQGGITVALGNAHEDNWEY 67

Query: 60  HYSDTMKGGGYINDKKLVDVLVKNAPNEFKNLEKFGCIFDRSESAEFAQRPFGGQSFN-- 117
           H  DT+KG  +I D+  ++ + +  P     LE  G  F R E+ +  QRPFGGQS N  
Sbjct: 68  HMYDTVKGSDFIGDQDAIEYMCQTGPEAIIELEHMGLPFSRFENGKIYQRPFGGQSKNFG 127

Query: 118 -----RTCYSGDRTGHEMIAGLMEYLNKFERIKILEDTMAIKLIVDEVEENGKKLKKCFG 172
                RT  + DRTGH ++  L +  N   + ++  +  A+ L+ +E   +G  +    G
Sbjct: 128 GEQAARTAAAADRTGHALLHCLYQQ-NVKNKTQVFSEWYALDLVKNE---DGAIV----G 179

Query: 173 AVFLDLLNGDIYPVYAKSTILATGGAGQIYPITSNPKQKVGDGFAIAYREGVELVDMEMV 232
              +D+ +G+I    AK+T+LATGGAG+IY  T+N     GDG  +AYR GV+L DMEM 
Sbjct: 180 CTAIDIESGEIVYFKAKATVLATGGAGRIYASTTNAHINTGDGVGMAYRAGVQLQDMEMW 239

Query: 233 QFHPTGMLGTGILVTEAVRGEGGILYNKNKERFMKNYDSKRMELSTRDVVAKAIYNEIQE 292
           QFHPTG+ G G+LVTE  RGEGG L NK+ ERFM+ Y     +L++RDVVA+++  EI+E
Sbjct: 240 QFHPTGIAGAGVLVTEGCRGEGGYLLNKDGERFMERYAPNAKDLASRDVVARSMMTEIRE 299

Query: 293 GRGIDG----GVYLDVTHLEPEVIKEKLETMFSQFK-LVGVDIRKEPMKVAPTAHHFMGG 347
           GRG DG     + L + HL  E ++ +L  +    +    +D    P+ V PT H+ MGG
Sbjct: 300 GRGCDGPMGPHIKLKLDHLGKETLEARLPGVCELSRTFAHIDPADGPIPVIPTCHYMMGG 359

Query: 348 I----------KINEDCETNISGLFACGEVA-GGLHGANRLGGNALAETQVFGSIAGRNA 396
           +          K ++  ET+I GLFA GE+A   +HGANRLGGN+L +  VFG  AG++ 
Sbjct: 360 LPTKVSGQVIRKNDDGSETDIVGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGQHL 419

Query: 397 LNYAEEKIDISKVYDS-VEKYIEKLKNTFKGSNSGNNVYSLIDELKNTMWDFVSISRDEN 455
               +E  D     D+ +E+ + +LK  ++ +  G +   +  +L+  M    S+ R   
Sbjct: 420 GKALDETADPKAATDADIEQSLARLKR-WESNKDGEDPAQIRKDLQMCMQLNFSVFRTGE 478

Query: 456 GLKTALEKINEIAGKKVLINGVVDFSKK---------LELENMVLVSKIVINSALLRKES 506
            +   LE++  I  +K L N  +  + K         LEL+N++  +     +A  R ES
Sbjct: 479 AMAEGLEQLQAI--RKRLENAKLSDNSKEFNTQRIECLELDNLMATAIATAYAANFRTES 536

Query: 507 RGAHFRNDYPKTNEE 521
           RGAH R D+ + +++
Sbjct: 537 RGAHSREDFTERDDD 551