Pairwise Alignments

Query, 539 a.a., fumarate reductase subunit A from Methanococcus maripaludis S2

Subject, 588 a.a., succinate dehydrogenase flavoprotein subunit (RefSeq) from Shewanella loihica PV-4

 Score =  295 bits (755), Expect = 3e-84
 Identities = 196/555 (35%), Positives = 305/555 (54%), Gaps = 49/555 (8%)

Query: 4   DVLIIGGGGAAARAAIECGQ--KNVVIASKGLFGKSGCTVMAEGGYNAVLNE--KDSFEK 59
           D ++IG GGA  RAA++  +  K+  + SK +F     TV A+GG    L    +D +E+
Sbjct: 9   DAVVIGAGGAGMRAALQISKEGKSCALLSK-VFPTRSHTVSAQGGITVALGNAHEDHWEQ 67

Query: 60  HYSDTMKGGGYINDKKLVDVLVKNAPNEFKNLEKFGCIFDRSESAEFAQRPFGGQSFN-- 117
           H  DT+KG  +I D+  ++ + +  P     LE  G  F R ++ +  QRPFGGQS N  
Sbjct: 68  HMYDTVKGSDFIGDQDAIEFMCQTGPEAIIELEHMGLPFSRFDNGKIYQRPFGGQSKNFG 127

Query: 118 -----RTCYSGDRTGHEMIAGLMEYLNKFERIKILEDTMAIKLIVDEVEENGKKLKKCFG 172
                RT  + DRTGH ++  L +  N   + ++  +  A+ L+ +E   +G  +    G
Sbjct: 128 GEQAARTAAAADRTGHALLHCLYQQ-NVKHKTEVFSEWYALDLVKNE---DGAIV----G 179

Query: 173 AVFLDLLNGDIYPVYAKSTILATGGAGQIYPITSNPKQKVGDGFAIAYREGVELVDMEMV 232
              +++  G+I    +K+TILATGGAG+IY  T+N     GDG  +A R GV++ DMEM 
Sbjct: 180 CTAIEIETGEIVYFKSKATILATGGAGRIYASTTNAHINTGDGVGMAMRAGVQMQDMEMW 239

Query: 233 QFHPTGMLGTGILVTEAVRGEGGILYNKNKERFMKNYDSKRMELSTRDVVAKAIYNEIQE 292
           QFHPTG+ G G+LVTE  RGEGG L NK+ ERFM+ Y     +L++RDVVA+++  EI+E
Sbjct: 240 QFHPTGIAGAGVLVTEGCRGEGGYLLNKDGERFMERYAPNAKDLASRDVVARSMMTEIRE 299

Query: 293 GRGIDGGV----YLDVTHLEPEVIKEKLETMFSQFK-LVGVDIRKEPMKVAPTAHHFMGG 347
           GRG+DG +     L + HL  E ++ +L  +    +    +D    P+ V PT H+ MGG
Sbjct: 300 GRGLDGPLGPHCLLKLDHLGKETLEARLPGVCELSRTFAHIDPADGPIPVLPTCHYMMGG 359

Query: 348 ---------IKINED-CETNISGLFACGEVA-GGLHGANRLGGNALAETQVFGSIAGRNA 396
                    I+ NED  E+++ GLFA GE+A   +HGANRLGGN+L +  VFG  AG++ 
Sbjct: 360 LPAKVSGQVIRKNEDGSESDVVGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGQHL 419

Query: 397 LNYAEEKIDISKV-YDSVEKYIEKLKNTFKGSNSGNNVYSLIDELKNTMWDFVSISRDEN 455
               +E  D  +   D + K +E+L N ++ +  G +   +  +L+  M    S+ R   
Sbjct: 420 GKALDETADPKEASADEIAKSLERL-NRWESNKDGEDPAQIRKDLQLCMQLNFSVFRTGE 478

Query: 456 GLKTALEKINEIAGKKVLINGVVDFSKK---------LELENMVLVSKIVINSALLRKES 506
            +   LE++  I  ++ L N  +  + +         LEL+N++  +     +A  R+ES
Sbjct: 479 AMAEGLEELKAI--RERLANAKLSDNSREFNTQRIECLELDNLMATAIATAYAANFRQES 536

Query: 507 RGAHFRNDYPKTNEE 521
           RGAH R D+ + ++E
Sbjct: 537 RGAHSREDFLERDDE 551