Pairwise Alignments

Query, 539 a.a., fumarate reductase subunit A from Methanococcus maripaludis S2

Subject, 588 a.a., succinate dehydrogenase flavoprotein subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  291 bits (744), Expect = 6e-83
 Identities = 191/554 (34%), Positives = 299/554 (53%), Gaps = 47/554 (8%)

Query: 4   DVLIIGGGGAAARAAIECGQ--KNVVIASKGLFGKSGCTVMAEGGYNAVLNE--KDSFEK 59
           D ++IG GGA  RAA++  +  K+  + SK +F     TV A+GG    L    +D +E+
Sbjct: 9   DAVVIGAGGAGMRAALQISKEGKSCALLSK-VFPTRSHTVSAQGGITVALGNAHEDHWEQ 67

Query: 60  HYSDTMKGGGYINDKKLVDVLVKNAPNEFKNLEKFGCIFDRSESAEFAQRPFGGQSFN-- 117
           H  DT+KG  +I D+  ++ + +  P     LE  G  F R ++ +  QRPFGGQS N  
Sbjct: 68  HMYDTVKGSDFIGDQDAIEFMCQTGPEAIIELEHMGLPFSRFDNGKIYQRPFGGQSKNFG 127

Query: 118 -----RTCYSGDRTGHEMIAGLMEYLNKFERIKILEDTMAIKLIVDEVEENGKKLKKCFG 172
                RT  + DRTGH ++  L +  N   + ++  +  A+ L+ ++   +G  +    G
Sbjct: 128 GEQAARTAAAADRTGHALLHCLYQQ-NVKHKTQVFSEWYALDLVKNQ---DGAIV----G 179

Query: 173 AVFLDLLNGDIYPVYAKSTILATGGAGQIYPITSNPKQKVGDGFAIAYREGVELVDMEMV 232
              +++  G+I    AK+T+LATGGAG+IY  T+N     GDG  +A R GV++ DMEM 
Sbjct: 180 CTAIEIETGEIVYFKAKATVLATGGAGRIYASTTNAHINTGDGVGMAMRAGVQMQDMEMW 239

Query: 233 QFHPTGMLGTGILVTEAVRGEGGILYNKNKERFMKNYDSKRMELSTRDVVAKAIYNEIQE 292
           QFHPTG+ G G+LVTE  RGEGG L NK+ ERFM+ Y     +L++RDVVA+++  EI+E
Sbjct: 240 QFHPTGIAGAGVLVTEGCRGEGGYLLNKDGERFMERYAPNAKDLASRDVVARSMMTEIRE 299

Query: 293 GRGIDGGV----YLDVTHLEPEVIKEKLETMFSQFK-LVGVDIRKEPMKVAPTAHHFMGG 347
           GRG+DG +     L + HL  E ++ +L  +    +    +D    P+ V PT H+ MGG
Sbjct: 300 GRGLDGPLGPHCLLKLDHLGKETLEARLPGVCELSRTFAHIDPADGPIPVLPTCHYMMGG 359

Query: 348 I----------KINEDCETNISGLFACGEVA-GGLHGANRLGGNALAETQVFGSIAGRNA 396
           +          K ++  E ++ GLFA GE+A   +HGANRLGGN+L +  VFG  AG++ 
Sbjct: 360 LPTKVSGQVIRKNDDGSEQDVVGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGQHL 419

Query: 397 LNYAEEKIDISKVYDSVEKYIEKLKNTFKGSNSGNNVYSLIDELKNTMWDFVSISRDENG 456
               +E  D     D+  +      N ++ + SG +   +  +L+  M    S+ R  + 
Sbjct: 420 GKALDETADPKDATDAEIQATLARLNRWESNKSGEDPAQIRKDLQLCMQLNFSVFRRGDA 479

Query: 457 LKTALEKINEIAGKKVLINGVVDFSKK---------LELENMVLVSKIVINSALLRKESR 507
           +   LE++  I  +K L N  +  + +         LEL+N++  +     +A  R ESR
Sbjct: 480 MAEGLEQLKAI--RKRLENAKLSDNSREFNTQRIECLELDNLMATAIATAYAANFRTESR 537

Query: 508 GAHFRNDYPKTNEE 521
           GAH R DY + +++
Sbjct: 538 GAHSREDYLERDDD 551