Pairwise Alignments

Query, 279 a.a., CBS domain-containing protein from Methanococcus maripaludis S2

Subject, 139 a.a., CBS domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 50.8 bits (120), Expect = 2e-11
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 4/130 (3%)

Query: 148 VKDCMTENVVFATPGERLKDVARTMLRNGFRRLPVVSEE--KLVGIITSTDFVKLFGSDW 205
           V D MT + V  +     KD    M   G R LPV+SE    LVGI+T    +       
Sbjct: 3   VSDIMTTDTVCISDQATTKDAHLLMSSRGVRHLPVISEADGTLVGILTHKKMISTV-MGM 61

Query: 206 AFNHMKTGNIREITNVRIQDIMKTNIVSVTSNIKLVDAIKKMNELNIGVLPVV-DGEKLI 264
             ++   G  R+     + +IM      VT +  L   +    +  +G LPVV D  K+I
Sbjct: 62  LTHYGNEGLDRQERRTSVAEIMDREFQRVTLDEPLAVVVDYFIDNKLGCLPVVDDNHKVI 121

Query: 265 GLITEKDIVK 274
           G++T  D VK
Sbjct: 122 GILTSSDFVK 131



 Score = 43.5 bits (101), Expect = 2e-09
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 13/133 (9%)

Query: 84  VKEIMTDNVVLIKENVELDEVIDLFVKKKIGGMPVIDKS-GVLITTINERDVIKYLK--- 139
           V +IMT + V I +     +   L   + +  +PVI ++ G L+  +  + +I  +    
Sbjct: 3   VSDIMTTDTVCISDQATTKDAHLLMSSRGVRHLPVISEADGTLVGILTHKKMISTVMGML 62

Query: 140 --------DQVDEKLLVKDCMTENVVFATPGERLKDVARTMLRNGFRRLPVVSEE-KLVG 190
                   D+ + +  V + M       T  E L  V    + N    LPVV +  K++G
Sbjct: 63  THYGNEGLDRQERRTSVAEIMDREFQRVTLDEPLAVVVDYFIDNKLGCLPVVDDNHKVIG 122

Query: 191 IITSTDFVKLFGS 203
           I+TS+DFVKL  S
Sbjct: 123 ILTSSDFVKLCAS 135



 Score = 39.3 bits (90), Expect = 5e-08
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 18  TTKIIEALTMMDKENVRRICVADPGTGRVEGILTNMDIVDFLGGGSKYNLVKFKHNHNML 77
           TTK  +A  +M    VR + V     G + GILT+  ++  + G     L  + +     
Sbjct: 19  TTK--DAHLLMSSRGVRHLPVISEADGTLVGILTHKKMISTVMG----MLTHYGNEGLDR 72

Query: 78  SAINEPVKEIMTDNVVLIKENVELDEVIDLFVKKKIGGMPVIDKSGVLITTINERDVIK 136
                 V EIM      +  +  L  V+D F+  K+G +PV+D +  +I  +   D +K
Sbjct: 73  QERRTSVAEIMDREFQRVTLDEPLAVVVDYFIDNKLGCLPVVDDNHKVIGILTSSDFVK 131



 Score = 31.6 bits (70), Expect = 1e-05
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 221 VRIQDIMKTNIVSVTSNIKLVDAIKKMNELNIGVLPVV---DGEKLIGLITEKDIVKCI 276
           +R+ DIM T+ V ++      DA   M+   +  LPV+   DG  L+G++T K ++  +
Sbjct: 1   MRVSDIMTTDTVCISDQATTKDAHLLMSSRGVRHLPVISEADG-TLVGILTHKKMISTV 58