Pairwise Alignments

Query, 279 a.a., CBS domain-containing protein from Methanococcus maripaludis S2

Subject, 172 a.a., CBS domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 56.2 bits (134), Expect = 5e-13
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 145 KLLVKDCMTENVVFATPGERLKDVARTMLRNGFRRLPVVSEE--KLVGIITSTDFVKLFG 202
           ++ V D M+  V+  + G  LKD    M   G R LPV+SE    LVG++T    +    
Sbjct: 31  RMKVSDIMSTEVICISDGASLKDAHHLMQTRGVRHLPVISETDGALVGVLTHKKMIASVL 90

Query: 203 SDWAFNHMKTGNI-REITNVRIQDIMKTNIVSVTSNIKLVDAIKKMNELNIGVLPVVD-G 260
           S    N    G + R+     I  +M  +  S+T N  L   ++   +  +G LPVVD  
Sbjct: 91  S--MLNKYGQGALDRKERYTPIATVMDKDCQSLTPNEPLSTVVEYFIDNKLGCLPVVDNN 148

Query: 261 EKLIGLITEKDIVK 274
           +K++G++T  D +K
Sbjct: 149 KKVLGIVTSSDFIK 162



 Score = 51.2 bits (121), Expect = 1e-11
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 23/135 (17%)

Query: 84  VKEIMTDNVVLIKENVELDEVIDLFVKKKIGGMPVIDKS-GVLITTINERDVI------- 135
           V +IM+  V+ I +   L +   L   + +  +PVI ++ G L+  +  + +I       
Sbjct: 34  VSDIMSTEVICISDGASLKDAHHLMQTRGVRHLPVISETDGALVGVLTHKKMIASVLSML 93

Query: 136 -KYLKDQVDEK--------LLVKDCMTENVVFATPGERLKDVARTMLRNGFRRLPVV-SE 185
            KY +  +D K        ++ KDC +      TP E L  V    + N    LPVV + 
Sbjct: 94  NKYGQGALDRKERYTPIATVMDKDCQS-----LTPNEPLSTVVEYFIDNKLGCLPVVDNN 148

Query: 186 EKLVGIITSTDFVKL 200
           +K++GI+TS+DF+KL
Sbjct: 149 KKVLGIVTSSDFIKL 163



 Score = 38.9 bits (89), Expect = 8e-08
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 23  EALTMMDKENVRRICVADPGTGRVEGILTNMDIV-DFLGGGSKYNLVKFKHNHNMLSAIN 81
           +A  +M    VR + V     G + G+LT+  ++   L   +KY                
Sbjct: 53  DAHHLMQTRGVRHLPVISETDGALVGVLTHKKMIASVLSMLNKYGQGALDRKERYT---- 108

Query: 82  EPVKEIMTDNVVLIKENVELDEVIDLFVKKKIGGMPVIDKSGVLITTINERDVIKYLKDQ 141
            P+  +M  +   +  N  L  V++ F+  K+G +PV+D +  ++  +   D IK  +  
Sbjct: 109 -PIATVMDKDCQSLTPNEPLSTVVEYFIDNKLGCLPVVDNNKKVLGIVTSSDFIKLCRTL 167

Query: 142 VDEK 145
           + ++
Sbjct: 168 LQQQ 171



 Score = 33.5 bits (75), Expect = 3e-06
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 218 ITNVRIQDIMKTNIVSVTSNIKLVDAIKKMNELNIGVLPVV---DGEKLIGLITEKDIVK 274
           I  +++ DIM T ++ ++    L DA   M    +  LPV+   DG  L+G++T K ++ 
Sbjct: 29  IYRMKVSDIMSTEVICISDGASLKDAHHLMQTRGVRHLPVISETDG-ALVGVLTHKKMIA 87

Query: 275 CI 276
            +
Sbjct: 88  SV 89