Pairwise Alignments

Query, 186 a.a., CBS domain-containing protein from Methanococcus maripaludis S2

Subject, 615 a.a., cyclic nucleotide-binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 46.2 bits (108), Expect = 1e-09
 Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 7   VTEAMSTPVATVTLDTTAYDVANILKEKGIGCLVVLNDAGKPVGIITERDLALGVVSRNL 66
           V+  MS     + ++ +  D A ++++  +  ++++ D  K  GI+T+RDL   V++ +L
Sbjct: 152 VSSLMSKQPLCLDINASVSDAARLMRDNRVSSVLII-DNQKLAGILTDRDLRNRVLAESL 210

Query: 67  KSKEVIVEEISSSKLIAIAPKSTLMDAARKMDTENVKRLPVIDGDELLGIVTVSDITK 124
               + V +  +     ++  + + +A   M   N+  LP++D    +G++T +DI +
Sbjct: 211 DGS-LPVHQAMTVTPTTLSANALVFEAMLLMSQHNIHHLPIMDEGHPIGVITSTDILR 267



 Score = 32.3 bits (72), Expect = 2e-05
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 5   LSVTEAMSTPVATVTLDTTAYDVANILKEKGIGCLVVLNDAGKPVGIITERDLALGVVSR 64
           L V +AM+    T++ +   ++   ++ +  I  L ++ D G P+G+IT  D+  G  S+
Sbjct: 214 LPVHQAMTVTPTTLSANALVFEAMLLMSQHNIHHLPIM-DEGHPIGVITSTDILRGQSSQ 272

Query: 65  NLKSKEVIVEEISSSKLIAIAPKSTLM 91
            L     I  +     LI ++ +  L+
Sbjct: 273 PLLLIGEIERQHDLESLIHVSKQIPLL 299