Pairwise Alignments

Query, 80 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 49.3 bits (116), Expect = 3e-11
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 17/67 (25%)

Query: 11  CHGCGNCVVACPVNA---QDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCGACIE 67
           C+ CG C+  CP NA     P+  G K P+               +VN D+C  CGAC  
Sbjct: 274 CNACGACISVCPCNALVFPQPEKQGDKVPNV--------------VVNQDVCILCGACTH 319

Query: 68  ACPVDAI 74
           +CPVDA+
Sbjct: 320 SCPVDAL 326



 Score = 40.8 bits (94), Expect = 1e-08
 Identities = 24/73 (32%), Positives = 35/73 (47%)

Query: 4   LKVYPEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCG 63
           +K+  + C  C  C  ACP NA +   Y     S  +K  +  E    + ++ DLC  CG
Sbjct: 187 IKIDLDACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKDLCVSCG 246

Query: 64  ACIEACPVDAIKL 76
            C   CP DAI++
Sbjct: 247 WCANICPADAIEV 259



 Score = 38.5 bits (88), Expect = 5e-08
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 11 CHGCGNCVVACPVNAQDPDVYGG--KGPSSDEKLIMRVENGVVSIVNGDLCGGCGACIEA 68
          C GCG C   CP +A +    G   KG     KL +            + C  CG C  A
Sbjct: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDI-----------SEKCVLCGMCACA 80

Query: 69 CPVDAIKLVI 78
          CP DA+KL I
Sbjct: 81 CPFDAVKLSI 90



 Score = 37.0 bits (84), Expect = 2e-07
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 4   LKVYPEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCG 63
           +++   KC  C  C + CP  A D +    +     + L++    G ++I   D C  CG
Sbjct: 108 IELNQSKCVLCEQCELVCPQCAIDVE----REVPERKSLVL----GEITIKKDD-CVLCG 158

Query: 64  ACIEACPVDAIKLV 77
            C E CP DAI+L+
Sbjct: 159 ICAEYCPADAIELI 172



 Score = 33.9 bits (76), Expect = 1e-06
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 16/64 (25%)

Query: 11  CHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCGACIEACP 70
           C  CG C   CP +A + +      P   E            I++   C  CGACI  CP
Sbjct: 242 CVSCGWCANICPADAIEVEK-----PFEGEL-----------IIDEPACNACGACISVCP 285

Query: 71  VDAI 74
            +A+
Sbjct: 286 CNAL 289



 Score = 30.0 bits (66), Expect = 2e-05
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 3   KLKVYPEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSI-VNGDLCGG 61
           ++ +  + C  CG C   CP +A +        P+    L +   N +  I ++ D C  
Sbjct: 146 EITIKKDDCVLCGICAEYCPADAIELI------PNDMNALSL---NPIADIKIDLDACVY 196

Query: 62  CGACIEACPVDAIKLVIVK 80
           C  C +ACP +AI+ +  K
Sbjct: 197 CKVCEKACPHNAIEAICYK 215



 Score = 23.1 bits (48), Expect = 0.002
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 6   VYPEKCHGCGNCVVACPVNA 25
           V  + C  CG C  +CPV+A
Sbjct: 306 VNQDVCILCGACTHSCPVDA 325