Pairwise Alignments

Query, 80 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 50.1 bits (118), Expect = 2e-11
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 11  CHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCGACIEACP 70
           C  CGNCV +CP N  +     G      ++L+  V   +  +++ ++C  CG C  ACP
Sbjct: 84  CINCGNCVESCPTNVLEM----GTLRKEAKELLWNVPKIINLLIDEEICVSCGTCENACP 139

Query: 71  VDAI 74
           VDAI
Sbjct: 140 VDAI 143



 Score = 38.1 bits (87), Expect = 8e-08
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 16/66 (24%)

Query: 9   EKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCGACIEA 68
           EKC GC  C  AC V                E +++  E  +   +N + C  CG C  A
Sbjct: 281 EKCIGCRICYRACNV---------------PEAILISKETNL-PYINPEYCVRCGLCQNA 324

Query: 69  CPVDAI 74
           CPVDAI
Sbjct: 325 CPVDAI 330



 Score = 34.7 bits (78), Expect = 9e-07
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 13/69 (18%)

Query: 8   PEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCGACIE 67
           PEKC  C  C  +CP +A   +       + + K  M V        +   C  CG C+E
Sbjct: 46  PEKCISCSACKESCPSDAISMEF------NEEFKKEMPV-------FDAGSCINCGNCVE 92

Query: 68  ACPVDAIKL 76
           +CP + +++
Sbjct: 93  SCPTNVLEM 101



 Score = 34.3 bits (77), Expect = 1e-06
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 24/72 (33%)

Query: 5   KVYPEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCGA 64
           ++ P  C GCGNCV  CP            G    E+L +              C   G 
Sbjct: 215 RIVPSLCIGCGNCVDVCP------------GSIDLERLKV------------TSCIKSGK 250

Query: 65  CIEACPVDAIKL 76
           C+E CP  AI++
Sbjct: 251 CLEVCPTTAIRI 262



 Score = 32.7 bits (73), Expect = 3e-06
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 18/69 (26%)

Query: 4   LKVYPEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCG 63
           L +  E C  CG C  ACPV+A                 I     G+  I + ++C  C 
Sbjct: 121 LLIDEEICVSCGTCENACPVDA-----------------ISHNNTGLYEI-DVNICVSCK 162

Query: 64  ACIEACPVD 72
            C++ CPV+
Sbjct: 163 NCLKVCPVE 171



 Score = 30.0 bits (66), Expect = 2e-05
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 6   VYPEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDL 58
           + PE C  CG C  ACPV+A D   Y     S D     ++ +   SI++ DL
Sbjct: 310 INPEYCVRCGLCQNACPVDAID---YLKTETSEDLYSKRKIRDEFESILHSDL 359