Pairwise Alignments

Query, 80 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 49.7 bits (117), Expect = 3e-11
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 31/102 (30%)

Query: 6   VYPEKCHGCGNCVVACPVNAQDPDV-YGGKGPSSDEKLI-------------MRVENGVV 51
           V P+ C  CG C+ ACPV+A +  V YG   P +DE ++             ++  N  +
Sbjct: 226 VPPKGCPACGLCMAACPVDAIELVVEYGSPKPITDEGIVWDEEKCAYCGPCAIKCPNNAI 285

Query: 52  SIVNGD-----------------LCGGCGACIEACPVDAIKL 76
           ++VN                   +C  CGAC+++CP DA+++
Sbjct: 286 NVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALRI 327



 Score = 42.4 bits (98), Expect = 4e-09
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 22/94 (23%)

Query: 3   KLKVYPEKCHGCGNCVVACP--------------------VNAQDPDVYGGKGPSSDEKL 42
           +++ +P KC  CG CV  CP                    V A   D  G +G     K 
Sbjct: 61  QIEYFPTKCDLCGECVKVCPNNLKIENDKLKGFCVGCMKCVEACPDDYVGMEGVVEPAKR 120

Query: 43  IMRVENGVVSIVNGDLCGGCGACIEACPVDAIKL 76
            + +    +++     C GCG CI  CPV A+ +
Sbjct: 121 NITLPKEPIAVTED--CVGCGVCISECPVGALSI 152



 Score = 42.4 bits (98), Expect = 4e-09
 Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 23/97 (23%)

Query: 3   KLKVYPEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDL---- 58
           K  V    C  C  C   CP NA    V G K P  D+ ++    +  + I  GD     
Sbjct: 156 KAVVDKNSCIYCSICAQTCPWNAIF--VAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKC 213

Query: 59  -----------------CGGCGACIEACPVDAIKLVI 78
                            C  CG C+ ACPVDAI+LV+
Sbjct: 214 PRDLIVLNEMVAVPPKGCPACGLCMAACPVDAIELVV 250



 Score = 38.5 bits (88), Expect = 6e-08
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 11  CHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCGACIEACP 70
           C  CG CV +CP +A    +  GK    D K   R+E       + +LC  CG CIE CP
Sbjct: 310 CIRCGACVQSCPNDA----LRIGK-IIHDGKEYERIE------FSPNLCDSCGKCIETCP 358

Query: 71  VDAIKL 76
            D + L
Sbjct: 359 YDMLNL 364



 Score = 36.2 bits (82), Expect = 3e-07
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 17/87 (19%)

Query: 4   LKVYPEK-CHGCGNCVVACP---VNAQDPDVYGGKGPSSDEKL---------IMRVENGV 50
           LK+ P K C  CGNCV ACP   +N ++ ++  GK     E            ++V    
Sbjct: 24  LKLNPFKVCQLCGNCVNACPNDALNLREIEL-NGKTIKQIEYFPTKCDLCGECVKVCPNN 82

Query: 51  VSIVNGDL---CGGCGACIEACPVDAI 74
           + I N  L   C GC  C+EACP D +
Sbjct: 83  LKIENDKLKGFCVGCMKCVEACPDDYV 109



 Score = 31.6 bits (70), Expect = 7e-06
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 25/73 (34%)

Query: 4  LKVYPEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCG 63
          +K+  E C+ C  C  +CP  A   + +                          +C  CG
Sbjct: 2  IKINTEDCYMCKACENSCPTEALKLNPF-------------------------KVCQLCG 36

Query: 64 ACIEACPVDAIKL 76
           C+ ACP DA+ L
Sbjct: 37 NCVNACPNDALNL 49



 Score = 26.2 bits (56), Expect = 3e-04
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 3   KLKVYPEKCHGCGNCVVACP 22
           +++  P  C  CG C+  CP
Sbjct: 339 RIEFSPNLCDSCGKCIETCP 358