Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 168 a.a., ferredoxin-type protein NapF from Vibrio cholerae E7946 ATCC 55056

 Score = 55.8 bits (133), Expect = 7e-13
 Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 20/140 (14%)

Query: 152 DDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIEA 211
           D+C  CG C   C    IE    D    ++N        +D C +C  C ++CP     A
Sbjct: 38  DECTRCGKCVTACETHIIE--KGDGGFPTVN------FSIDECTFCYQCAQSCPEPLFVA 89

Query: 212 ICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANICPADAIEVEKPF--EGELII 269
              + P  +K+    +      Q  ++      C  C + CP +AI             +
Sbjct: 90  QS-EAPWQAKV---HITHHCLAQQQVE------CRSCQDACPEEAIHFALQIGRTASPQV 139

Query: 270 DEPACNACGACISVCPCNAL 289
           +   C+ CGAC+SVCP NA+
Sbjct: 140 NSEQCSGCGACVSVCPSNAM 159



 Score = 54.3 bits (129), Expect = 2e-12
 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 19/142 (13%)

Query: 68  SEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQ 127
           +++C  CG C  AC    ++      P             +  +  +C  C QC   CP+
Sbjct: 37  TDECTRCGKCVTACETHIIEKGDGGFPT------------VNFSIDECTFCYQCAQSCPE 84

Query: 128 CAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADI 187
                + E P +  + +    + +   V C  C + CP +AI        AL +   A  
Sbjct: 85  PLFVAQSEAPWQAKVHITHHCLAQQQ-VECRSCQDACPEEAIHF------ALQIGRTASP 137

Query: 188 KIDLDACVYCKVCEKACPHNAI 209
           +++ + C  C  C   CP NA+
Sbjct: 138 QVNSEQCSGCGACVSVCPSNAM 159



 Score = 53.1 bits (126), Expect = 5e-12
 Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 20/139 (14%)

Query: 32  CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDIS-EKCVLCGMCACACPFDAVKLSI 90
           C  CG C   C T  IE        KGD   P ++ S ++C  C  CA +CP        
Sbjct: 40  CTRCGKCVTACETHIIE--------KGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQ- 90

Query: 91  NDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIK 150
                +E P   K+         + V C  C+  CP+ AI    ++    S       + 
Sbjct: 91  -----SEAPWQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTAS-----PQVN 140

Query: 151 KDDCVLCGICAEYCPADAI 169
            + C  CG C   CP++A+
Sbjct: 141 SEQCSGCGACVSVCPSNAM 159



 Score = 48.1 bits (113), Expect = 2e-10
 Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 27/148 (18%)

Query: 192 DACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANI 251
           D C  C  C  AC  + IE      P                  N   + C  C  CA  
Sbjct: 38  DECTRCGKCVTACETHIIEKGDGGFPTV----------------NFSIDECTFCYQCAQS 81

Query: 252 CPADAI--EVEKPFEGELIIDEPACNA-----CGACISVCPCNALVFPQPEKQGDKVPNV 304
           CP      + E P++ ++ I    C A     C +C   CP  A+ F     Q  +  + 
Sbjct: 82  CPEPLFVAQSEAPWQAKVHITHH-CLAQQQVECRSCQDACPEEAIHFAL---QIGRTASP 137

Query: 305 VVNQDVCILCGACTHSCPVDALTVKRTK 332
            VN + C  CGAC   CP +A+TV  T+
Sbjct: 138 QVNSEQCSGCGACVSVCPSNAMTVHYTQ 165



 Score = 44.3 bits (103), Expect = 2e-09
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 24/139 (17%)

Query: 125 CPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAI----ELIPNDMNALS 180
           C +C    E  + E+       +    D+C  C  CA+ CP        E        ++
Sbjct: 43  CGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAKVHIT 102

Query: 181 LNPIADIKIDLDACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKE 240
            + +A  +++      C+ C+ ACP  AI         A +I +            ++ E
Sbjct: 103 HHCLAQQQVE------CRSCQDACPEEAIH-------FALQIGR-------TASPQVNSE 142

Query: 241 LCVSCGWCANICPADAIEV 259
            C  CG C ++CP++A+ V
Sbjct: 143 QCSGCGACVSVCPSNAMTV 161