Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 162 a.a., NADH-quinone oxidoreductase, chain I (NCBI) from Rhodospirillum rubrum S1H

 Score = 53.1 bits (126), Expect = 5e-12
 Identities = 24/63 (38%), Positives = 31/63 (49%)

Query: 112 QSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIEL 171
           + +C+ C+ CE +CP  AI +E E     S       I    C+ CG C E CP DAI  
Sbjct: 60  EERCIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAIVE 119

Query: 172 IPN 174
            PN
Sbjct: 120 GPN 122



 Score = 46.2 bits (108), Expect = 6e-10
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 151 KDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAI- 209
           ++ C+ C +C   CPA AI  I  +             ID+  C+YC  CE+ACP +AI 
Sbjct: 60  EERCIACKLCEAICPAQAIT-IEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAIV 118

Query: 210 EAICYKCPLASKIKKPELYGEIKGQTNIDK 239
           E   ++   A++ ++  LY + K   N D+
Sbjct: 119 EGPNFE--FAAETREELLYNKAKLLANGDR 146



 Score = 44.7 bits (104), Expect = 2e-09
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 271 EPACNACGACISVCPCNALVFP-QPEKQGDK-VPNVVVNQDVCILCGACTHSCPVDAL 326
           E  C AC  C ++CP  A+    +P   G +      ++   CI CG C  +CPVDA+
Sbjct: 60  EERCIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 117



 Score = 43.9 bits (102), Expect = 3e-09
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 10/71 (14%)

Query: 192 DACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANI 251
           + C+ CK+CE  CP  AI       P     ++   Y       +ID   C+ CG+C   
Sbjct: 61  ERCIACKLCEAICPAQAITIEAE--PRTDGSRRTTRY-------DIDMTKCIYCGFCEEA 111

Query: 252 CPADAIEVEKP 262
           CP DAI VE P
Sbjct: 112 CPVDAI-VEGP 121



 Score = 42.7 bits (99), Expect = 6e-09
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 32  CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDIS-EKCVLCGMCACACPFDAV 86
           C+ C +C  ICP  AI +        G     + DI   KC+ CG C  ACP DA+
Sbjct: 63  CIACKLCEAICPAQAITIEAEPRT-DGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 117



 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 239 KELCVSCGWCANICPADA--IEVEKPFEG-----ELIIDEPACNACGACISVCPCNALV 290
           +E C++C  C  ICPA A  IE E   +G        ID   C  CG C   CP +A+V
Sbjct: 60  EERCIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAIV 118



 Score = 39.3 bits (90), Expect = 7e-08
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 48  EMGPLGAIFKGDIDAPKL-DISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKR 106
           E G L   F+G+    +  +  E+C+ C +C   CP  A+  +I  +P T+     +   
Sbjct: 39  EKGYLSPRFRGEHALRRYANGEERCIACKLCEAICPAQAI--TIEAEPRTD---GSRRTT 93

Query: 107 GIELNQSKCVLCEQCELVCPQCAI 130
             +++ +KC+ C  CE  CP  AI
Sbjct: 94  RYDIDMTKCIYCGFCEEACPVDAI 117



 Score = 33.1 bits (74), Expect = 5e-06
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 17  RSGVEKRVLKWD-DCT-CVGCGICSEICPTSAIEMGP 51
           R+   +R  ++D D T C+ CG C E CP  AI  GP
Sbjct: 85  RTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAIVEGP 121



 Score = 25.4 bits (54), Expect = 0.001
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 308 QDVCILCGACTHSCPVDALTVK 329
           ++ CI C  C   CP  A+T++
Sbjct: 60  EERCIACKLCEAICPAQAITIE 81