Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 181 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 62.8 bits (151), Expect = 7e-15
 Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 16/156 (10%)

Query: 179 LSLNPIADIKIDLDACVYCKVCEKACP-HNAIEAICYKCPLASKIKKPELYGEIKGQTNI 237
           +SLN         + CV C  C  AC  HN +       P   + +K + Y   +    I
Sbjct: 1   MSLNKKVGFVFRQENCVGCGACTVACQIHNEL-------PENHRFRKVDRYEVKRDDGAI 53

Query: 238 DKELCVSCGWCAN-----ICPADAIEVEKPFEGELIIDEPACNACGACISVCPCNALVFP 292
           D  L  SC  C N     +CPA A  V    +G +++D   C  CG C S CP  A+   
Sbjct: 54  DVWLSHSCMHCENPACLMVCPAKAYHVRD--DGIVVLDREKCTGCGLCASACPYAAVSIR 111

Query: 293 QPEKQGDKVPNVVVNQDVCILCGACTHSCPVDALTV 328
           + + + DK  N+ V      +  AC   CPV+ L V
Sbjct: 112 EDDGKADKC-NMCVELLDRGMKPACVSGCPVECLDV 146



 Score = 47.0 bits (110), Expect = 4e-10
 Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 34/154 (22%)

Query: 69  EKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKR----------GIELNQSKCVLC 118
           E CV CG C  AC         N+ P  E  ++ K+ R           + L+ S C+ C
Sbjct: 14  ENCVGCGACTVACQIH------NELP--ENHRFRKVDRYEVKRDDGAIDVWLSHS-CMHC 64

Query: 119 EQ--CELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDM 176
           E   C +VCP  A  V  +         G + + ++ C  CG+CA  CP  A+ +  +D 
Sbjct: 65  ENPACLMVCPAKAYHVRDD---------GIVVLDREKCTGCGLCASACPYAAVSIREDDG 115

Query: 177 NALSLNPIADIKIDLDACVYCKVCEKACPHNAIE 210
            A   N   ++   LD  +    C   CP   ++
Sbjct: 116 KADKCNMCVEL---LDRGMK-PACVSGCPVECLD 145



 Score = 39.7 bits (91), Expect = 6e-08
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 22/91 (24%)

Query: 4   FKKDENDGVIEISRSGVEKRVLKWDDCTCVGCG--ICSEICPTSAIEMGPLGAIFKGDID 61
           ++   +DG I++           W   +C+ C    C  +CP  A  +   G +      
Sbjct: 44  YEVKRDDGAIDV-----------WLSHSCMHCENPACLMVCPAKAYHVRDDGIVV----- 87

Query: 62  APKLDISEKCVLCGMCACACPFDAVKLSIND 92
              LD  EKC  CG+CA ACP+ AV +  +D
Sbjct: 88  ---LD-REKCTGCGLCASACPYAAVSIREDD 114



 Score = 36.6 bits (83), Expect = 5e-07
 Identities = 36/156 (23%), Positives = 51/156 (32%), Gaps = 41/156 (26%)

Query: 32  CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLD-------ISEKCVLCGMCACACPFD 84
           CVGCG C+  C     E+       K D    K D       +S  C+ C   AC     
Sbjct: 16  CVGCGACTVACQIHN-ELPENHRFRKVDRYEVKRDDGAIDVWLSHSCMHCENPACLMVCP 74

Query: 85  AVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVL 144
           A    + D  I            + L++ KC  C  C   CP  A+ +            
Sbjct: 75  AKAYHVRDDGI------------VVLDREKCTGCGLCASACPYAAVSIR----------- 111

Query: 145 GEITIKKDDCVLC---------GICAEYCPADAIEL 171
            E   K D C +C           C   CP + +++
Sbjct: 112 -EDDGKADKCNMCVELLDRGMKPACVSGCPVECLDV 146