Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 138 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 62.4 bits (150), Expect = 6e-15
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 190 DLDACVYCKVCEKACPHNAIEAI------CYKCPLAS--KIKKPELYGEIKGQTNIDKEL 241
           ++D CV CK CE+ACP NAI         C  C  A    +   +   +I  +  +  E 
Sbjct: 6   NIDLCVDCKKCERACPINAIHVFDGIPIRCMHCEDAPCLNVCPEDAIEKIADKVVVHPEK 65

Query: 242 CVSCGWCANICPADAIEVEKPFEGELIIDEPACNACGACISVCPCNAL 289
           CV C  CA +CP  AI++++  +  +  D         C+ VCP  AL
Sbjct: 66  CVGCALCAEVCPVGAIQIDRCTKVAVKCDGCIERGSEVCLEVCPTKAL 113



 Score = 55.8 bits (133), Expect = 6e-13
 Identities = 41/106 (38%), Positives = 54/106 (50%), Gaps = 20/106 (18%)

Query: 231 IKGQTNIDKELCVSCGWCANICPADAIEVEKPFEGELIIDEPACNAC--GACISVCPCNA 288
           +K   NID  LCV C  C   CP +AI V   F+G  I     C  C    C++VCP +A
Sbjct: 1   MKVMPNID--LCVDCKKCERACPINAIHV---FDGIPI----RCMHCEDAPCLNVCPEDA 51

Query: 289 LVFPQPEKQGDKVPNVVVNQDVCILCGACTHSCPVDALTVKR-TKI 333
           +     EK  DKV   VV+ + C+ C  C   CPV A+ + R TK+
Sbjct: 52  I-----EKIADKV---VVHPEKCVGCALCAEVCPVGAIQIDRCTKV 89



 Score = 55.1 bits (131), Expect = 1e-12
 Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 42/161 (26%)

Query: 32  CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCAC--ACPFDAVKLS 89
           CV C  C   CP +AI       +F G        I  +C+ C    C   CP DA++  
Sbjct: 10  CVDCKKCERACPINAIH------VFDG--------IPIRCMHCEDAPCLNVCPEDAIE-- 53

Query: 90  INDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITI 149
                        KI   + ++  KCV C  C  VCP  AI ++R           ++ +
Sbjct: 54  -------------KIADKVVVHPEKCVGCALCAEVCPVGAIQIDR---------CTKVAV 91

Query: 150 KKDDCVLCG--ICAEYCPADAIELIPNDMNALSLNPIADIK 188
           K D C+  G  +C E CP  A++   N +       ++ +K
Sbjct: 92  KCDGCIERGSEVCLEVCPTKALDYYENTIENKRAELVSKLK 132



 Score = 52.8 bits (125), Expect = 5e-12
 Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 51/171 (29%)

Query: 63  PKLDISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQ-- 120
           P +D+   CV C  C  ACP +A+ +  +  PI                  +C+ CE   
Sbjct: 5   PNIDL---CVDCKKCERACPINAIHV-FDGIPI------------------RCMHCEDAP 42

Query: 121 CELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALS 180
           C  VCP+ AI+           +  ++ +  + CV C +CAE CP  AI+          
Sbjct: 43  CLNVCPEDAIEK----------IADKVVVHPEKCVGCALCAEVCPVGAIQ---------- 82

Query: 181 LNPIADIKIDLDACVY--CKVCEKACPHNAIEAI-----CYKCPLASKIKK 224
           ++    + +  D C+    +VC + CP  A++         +  L SK+KK
Sbjct: 83  IDRCTKVAVKCDGCIERGSEVCLEVCPTKALDYYENTIENKRAELVSKLKK 133



 Score = 30.8 bits (68), Expect = 2e-05
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 11  GVIEISRSGVEKRVLKWDDCTCVGCGICSEICPTSAIE 48
           G I+I R    K  +K D C   G  +C E+CPT A++
Sbjct: 79  GAIQIDRC--TKVAVKCDGCIERGSEVCLEVCPTKALD 114