Pairwise Alignments
Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Score = 136 bits (343), Expect = 8e-37
Identities = 93/320 (29%), Positives = 137/320 (42%), Gaps = 60/320 (18%)
Query: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACP--------- 82
C+ C C++ CPT AIE+ P + C+ C CA ACP
Sbjct: 11 CLVCNACAKACPTEAIEIAPF----------------KTCIQCFSCATACPTGALVEKDG 54
Query: 83 ---FDAVKLSINDKPITEMP-QYPKIKRGIELNQSKCVLCEQCELVCPQCAIDV--EREV 136
F+ K ++ P K+ ++ CVLCE+C +CP I + + E
Sbjct: 55 KLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKGHCVLCEKCVDICPAEIISLPGKAEK 114
Query: 137 PERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVY 196
P+++ ++ E DCV CG+C CP DAI S+ IA ID D C+Y
Sbjct: 115 PKKEIIIPQEPIAVTKDCVACGVCVPECPVDAI----------SIEDIA--VIDTDKCIY 162
Query: 197 CKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANICPADA 256
C VC + CP NAI +A K+ P+ + +++E C+ C C CP
Sbjct: 163 CTVCSQTCPWNAIF-------VAGKL--PQKRQKTIKSFTVNEEECIGCEKCVEACPGSM 213
Query: 257 IEVEKPFEGELI-IDEP-ACNACGACISVCPCNALVFPQPEKQGDKVPN--VVVNQDVCI 312
IE + GE + + P AC ACG C+ CP + V + +V +++ C
Sbjct: 214 IE----YNGEALGVKLPGACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCA 269
Query: 313 LCGACTHSCPVDALTVKRTK 332
CG C CP A+ V K
Sbjct: 270 YCGPCAIKCPTGAIKVVNPK 289
Score = 123 bits (309), Expect = 7e-33
Identities = 89/305 (29%), Positives = 131/305 (42%), Gaps = 45/305 (14%)
Query: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPK--LDISEKCVLCGMCACACPFDAVKLS 89
CV C C +ICP I + K +I P+ + +++ CV CG+C CP DA+ S
Sbjct: 91 CVLCEKCVDICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAI--S 148
Query: 90 INDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITI 149
I D + ++ KC+ C C CP AI V ++P+++ + T+
Sbjct: 149 IEDIAV--------------IDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTV 194
Query: 150 KKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAI 209
+++C+ C C E CP IE N +L +K+ AC C +C ++CP +
Sbjct: 195 NEEECIGCEKCVEACPGSMIE-----YNGEALG----VKLP-GACPACGLCVESCP---V 241
Query: 210 EAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANICPADAIEVEKPFEGELII 269
E I + AS KP + +E C CG CA CP AI+V P EL
Sbjct: 242 EVISLEVEYAS--AKPVTDEGLVW----SEEKCAYCGPCAIKCPTGAIKVVNPKGLELPS 295
Query: 270 DEPA--------CNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHSC 321
+ C CGAC CP AL + +G + V + +C CG C C
Sbjct: 296 KKKTEKANEFAMCIRCGACAMKCPTGALKMGKMVHEGKEYARVEFSPALCNECGECVDVC 355
Query: 322 PVDAL 326
P L
Sbjct: 356 PQKTL 360
Score = 88.6 bits (218), Expect = 3e-22
Identities = 61/208 (29%), Positives = 89/208 (42%), Gaps = 60/208 (28%)
Query: 147 ITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPH 206
I+I++D C++C CA+ CP +AIE+ P C+ C C ACP
Sbjct: 4 ISIQEDACLVCNACAKACPTEAIEIAP-----------------FKTCIQCFSCATACPT 46
Query: 207 NA----------------IEAICYK-CPLASKIKKPELYGEIKGQTNIDKELCVSCGWCA 249
A ++ C K CP+ K K + + KG CV C C
Sbjct: 47 GALVEKDGKLVFNGSKCDLDGACQKACPVGIK-KVDDRFPYSKGH-------CVLCEKCV 98
Query: 250 NICPADAI----EVEKPFEGELIIDEPA-----CNACGACISVCPCNALVFPQPEKQGDK 300
+ICPA+ I + EKP + +I EP C ACG C+ CP +A+
Sbjct: 99 DICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAISIED------- 151
Query: 301 VPNVVVNQDVCILCGACTHSCPVDALTV 328
V++ D CI C C+ +CP +A+ V
Sbjct: 152 --IAVIDTDKCIYCTVCSQTCPWNAIFV 177
Score = 85.1 bits (209), Expect = 3e-21
Identities = 57/184 (30%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACPFDAVKLSIN 91
C CG+C E CP I + A K D + EKC CG CA CP A+K+ +N
Sbjct: 229 CPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKV-VN 287
Query: 92 DKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKK 151
K + E+P K ++ E + C+ C C + CP A+ + + V E K E +
Sbjct: 288 PKGL-ELPSKKKTEKANEF--AMCIRCGACAMKCPTGALKMGKMVHEGKEYARVEFSPAL 344
Query: 152 DDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIEA 211
C CG C + CP +EL +D L CV C C +AC EA
Sbjct: 345 --CNECGECVDVCPQKTLELTGDDKMPLK-----------GYCVMCLKCIEACNKTKKEA 391
Query: 212 ICYK 215
+ K
Sbjct: 392 LSLK 395
Score = 83.2 bits (204), Expect = 1e-20
Identities = 66/262 (25%), Positives = 101/262 (38%), Gaps = 38/262 (14%)
Query: 28 DDCTCVGCGICSEICPTSAIEM-GPLGAIFKGDIDAPKLDISEKCVLCGMCACACPFDAV 86
D C+ C +CS+ CP +AI + G L + I + ++ E+C+ C C ACP
Sbjct: 156 DTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVN-EEECIGCEKCVEACP---- 210
Query: 87 KLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGE 146
M +Y G++L C C C CP I +E E K +
Sbjct: 211 ---------GSMIEYNGEALGVKL-PGACPACGLCVESCPVEVISLEVEYASAKPVTDEG 260
Query: 147 ITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPH 206
+ ++ C CG CA CP AI+++ L + + C+ C C CP
Sbjct: 261 LVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPT 320
Query: 207 NAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANICPADAIEV----EKP 262
A+ K+ K G+ + LC CG C ++CP +E+ + P
Sbjct: 321 GAL-----------KMGKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLELTGDDKMP 369
Query: 263 FEGELIIDEPACNACGACISVC 284
+G C C CI C
Sbjct: 370 LKG-------YCVMCLKCIEAC 384
Score = 64.3 bits (155), Expect = 5e-15
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 25 LKWDDCTCVGCGICSEICPTSAIE-MGPLGAIFKGDIDAPKLDISEKCVLCGMCACACPF 83
L W + C CG C+ CPT AI+ + P G K + C+ CG CA CP
Sbjct: 261 LVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPT 320
Query: 84 DAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLV 143
A+K+ K + E +Y + +E + + C C +C VCPQ +++ + ++ L
Sbjct: 321 GALKMG---KMVHEGKEYAR----VEFSPALCNECGECVDVCPQKTLELTGD--DKMPL- 370
Query: 144 LGEITIKKDDCVLCGICAEYC 164
K CV+C C E C
Sbjct: 371 -------KGYCVMCLKCIEAC 384
Score = 37.4 bits (85), Expect = 7e-07
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
Query: 269 IDEPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHSCPVDALTV 328
I E AC C AC CP A+ P K CI C +C +CP AL
Sbjct: 6 IQEDACLVCNACAKACPTEAIEIA-PFK-------------TCIQCFSCATACPTGALVE 51
Query: 329 KRTKI 333
K K+
Sbjct: 52 KDGKL 56
Score = 33.1 bits (74), Expect = 1e-05
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 19 GVEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCA 78
G E +++ C CG C ++CP +E+ GD K+ + CV+C C
Sbjct: 332 GKEYARVEFSPALCNECGECVDVCPQKTLEL-------TGD---DKMPLKGYCVMCLKCI 381
Query: 79 CAC 81
AC
Sbjct: 382 EAC 384