Pairwise Alignments
Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Score = 134 bits (338), Expect = 3e-36
Identities = 91/326 (27%), Positives = 144/326 (44%), Gaps = 68/326 (20%)
Query: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACPFDAVKL--- 88
C C C CPT A+++ P + C LCG C ACP DA+ L
Sbjct: 9 CYMCKACENSCPTEALKLNPF----------------KVCQLCGNCVNACPNDALNLREI 52
Query: 89 SINDKPITEMPQYPK-----------IKRGIELNQSK----CVLCEQCELVCPQCAIDVE 133
+N K I ++ +P +++ K CV C +C CP + +E
Sbjct: 53 ELNGKTIKQIEYFPTKCDLCGECVKVCPNNLKIENDKLKGFCVGCMKCVEACPDDYVGME 112
Query: 134 REV-PERKSLVLGEITIK-KDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDL 191
V P ++++ L + I +DCV CG+C CP + ALS+ + +D
Sbjct: 113 GVVEPAKRNITLPKEPIAVTEDCVGCGVCISECP----------VGALSIEGEKAV-VDK 161
Query: 192 DACVYCKVCEKACPHNAIEAICYKCPLASK-IKKPELYGEIKGQTNIDKELCVSCGWCAN 250
++C+YC +C + CP NAI K P K I K ++D +LC+ CG C +
Sbjct: 162 NSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVK----------FSVDSDLCIGCGDCTD 211
Query: 251 ICPADAIEVEKPFEGELIIDEPACNACGACISVCPCNAL----VFPQPEKQGDKVPNVVV 306
CP D I + + + + C ACG C++ CP +A+ + P+ D+ +V
Sbjct: 212 KCPRDLIVLNE----MVAVPPKGCPACGLCMAACPVDAIELVVEYGSPKPITDE--GIVW 265
Query: 307 NQDVCILCGACTHSCPVDALTVKRTK 332
+++ C CG C CP +A+ V K
Sbjct: 266 DEEKCAYCGPCAIKCPNNAINVVNPK 291
Score = 128 bits (322), Expect = 2e-34
Identities = 88/311 (28%), Positives = 133/311 (42%), Gaps = 54/311 (17%)
Query: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPK--LDISEKCVLCGMCACACPFDAVKLS 89
CVGC C E CP + M + K +I PK + ++E CV CG+C CP A+ +
Sbjct: 94 CVGCMKCVEACPDDYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSIE 153
Query: 90 INDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITI 149
+K + + ++ C+ C C CP AI V + ++ + + ++
Sbjct: 154 -GEKAVVD--------------KNSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSV 198
Query: 150 KKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAI 209
D C+ CG C + CP D I L N+M + + C C +C ACP +AI
Sbjct: 199 DSDLCIGCGDCTDKCPRDLIVL--NEM----------VAVPPKGCPACGLCMAACPVDAI 246
Query: 210 EAICYKCPLASKIKKPELYGEIKGQTNI----DKELCVSCGWCANICPADAIEVEKPF-- 263
E + YG K T+ D+E C CG CA CP +AI V P
Sbjct: 247 ELVVE-------------YGSPKPITDEGIVWDEEKCAYCGPCAIKCPNNAINVVNPKGL 293
Query: 264 ------EGELIIDEPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGAC 317
+ E + C CGAC+ CP +AL + G + + + ++C CG C
Sbjct: 294 EMPSRKKTEKANEFKMCIRCGACVQSCPNDALRIGKIIHDGKEYERIEFSPNLCDSCGKC 353
Query: 318 THSCPVDALTV 328
+CP D L +
Sbjct: 354 IETCPYDMLNL 364
Score = 116 bits (291), Expect = 9e-31
Identities = 92/325 (28%), Positives = 125/325 (38%), Gaps = 58/325 (17%)
Query: 14 EISRSGVEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVL 73
EI +G + +++ C CG C ++CP + I+ KL CV
Sbjct: 51 EIELNGKTIKQIEYFPTKCDLCGECVKVCPNNL------------KIENDKL--KGFCVG 96
Query: 74 CGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVE 133
C C ACP D V + +P PK + CV C C CP A+ +E
Sbjct: 97 CMKCVEACPDDYVGMEGVVEPAKRNITLPKEPIAV---TEDCVGCGVCISECPVGALSIE 153
Query: 134 REVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDA 193
E + + K+ C+ C ICA+ CP +AI + N I +D D
Sbjct: 154 GE----------KAVVDKNSCIYCSICAQTCPWNAIFVAGKKSPKRDKN-IVKFSVDSDL 202
Query: 194 CVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANICP 253
C+ C C CP + I + + + C +CG C CP
Sbjct: 203 CIGCGDCTDKCPRDLI--------------------VLNEMVAVPPKGCPACGLCMAACP 242
Query: 254 ADAIEV------EKPFEGELII-DEPACNACGACISVCPCNALVFPQP---EKQGDKVPN 303
DAIE+ KP E I+ DE C CG C CP NA+ P E K
Sbjct: 243 VDAIELVVEYGSPKPITDEGIVWDEEKCAYCGPCAIKCPNNAINVVNPKGLEMPSRKKTE 302
Query: 304 VVVNQDVCILCGACTHSCPVDALTV 328
+CI CGAC SCP DAL +
Sbjct: 303 KANEFKMCIRCGACVQSCPNDALRI 327
Score = 99.0 bits (245), Expect = 2e-25
Identities = 69/243 (28%), Positives = 103/243 (42%), Gaps = 46/243 (18%)
Query: 108 IELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPAD 167
I++N C +C+ CE CP ++L L + C LCG C CP D
Sbjct: 2 IKINTEDCYMCKACENSCPT------------EALKLNPFKV----CQLCGNCVNACPND 45
Query: 168 AIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHN------AIEAICYKCPLASK 221
A+ L ++N I I+ C C C K CP+N ++ C C +
Sbjct: 46 ALNLREIELNG---KTIKQIEYFPTKCDLCGECVKVCPNNLKIENDKLKGFCVGC-MKCV 101
Query: 222 IKKPELYGEIKGQTNIDK-------------ELCVSCGWCANICPADAIEVEKPFEGELI 268
P+ Y ++G K E CV CG C + CP A+ +E + +
Sbjct: 102 EACPDDYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSIEGE---KAV 158
Query: 269 IDEPACNACGACISVCPCNALVFPQPEKQGDKVPNVV---VNQDVCILCGACTHSCPVDA 325
+D+ +C C C CP NA +F +K + N+V V+ D+CI CG CT CP D
Sbjct: 159 VDKNSCIYCSICAQTCPWNA-IFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDL 217
Query: 326 LTV 328
+ +
Sbjct: 218 IVL 220
Score = 91.7 bits (226), Expect = 3e-23
Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 21 EKRVLKW--DDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCA 78
+K ++K+ D C+GCG C++ CP I + + A+ PK C CG+C
Sbjct: 190 DKNIVKFSVDSDLCIGCGDCTDKCPRDLIVLNEMVAV------PPK-----GCPACGLCM 238
Query: 79 CACPFDAVKLSI---NDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVER- 134
ACP DA++L + + KPIT+ GI ++ KC C C + CP AI+V
Sbjct: 239 AACPVDAIELVVEYGSPKPITD--------EGIVWDEEKCAYCGPCAIKCPNNAINVVNP 290
Query: 135 ---EVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIEL--IPNDMNALSLNPIADIKI 189
E+P RK E + C+ CG C + CP DA+ + I +D I+
Sbjct: 291 KGLEMPSRKKT---EKANEFKMCIRCGACVQSCPNDALRIGKIIHDGKEYE-----RIEF 342
Query: 190 DLDACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCA 249
+ C C C + CP++ + L K +KP ++G CV C C
Sbjct: 343 SPNLCDSCGKCIETCPYDMLN-------LTGKPEKP-----LEG-------FCVMCLKCI 383
Query: 250 NIC 252
C
Sbjct: 384 EAC 386
Score = 40.4 bits (93), Expect = 8e-08
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 14/66 (21%)
Query: 269 IDEPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHSCPVDALTV 328
I+ C C AC + CP AL P K VC LCG C ++CP DAL +
Sbjct: 4 INTEDCYMCKACENSCPTEALKL-NPFK-------------VCQLCGNCVNACPNDALNL 49
Query: 329 KRTKIN 334
+ ++N
Sbjct: 50 REIELN 55
Score = 32.3 bits (72), Expect = 2e-05
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 304 VVVNQDVCILCGACTHSCPVDALTVKRTKI 333
+ +N + C +C AC +SCP +AL + K+
Sbjct: 2 IKINTEDCYMCKACENSCPTEALKLNPFKV 31
Score = 30.0 bits (66), Expect = 1e-04
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 14 EISRSGVEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVL 73
+I G E +++ C CG C E CP + + P+ + CV+
Sbjct: 329 KIIHDGKEYERIEFSPNLCDSCGKCIETCPYDMLNL----------TGKPEKPLEGFCVM 378
Query: 74 CGMCACAC 81
C C AC
Sbjct: 379 CLKCIEAC 386