Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 180 a.a., NADH dehydrogenase I, I subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 51.2 bits (121), Expect = 2e-11
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 66  DISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVC 125
           D  E+CV C +CA ACP   + L  +++   +   YP+  R   +N S+C+ C  CE  C
Sbjct: 55  DGDERCVACNLCAVACPVGCISLQKSER--DDGRWYPEFFR---INFSRCIFCGLCEEAC 109

Query: 126 PQCAIDVEREVPERKSLVLGEITIKKDDCVLCG 158
           P  AI +  +  E       ++  +K+D ++ G
Sbjct: 110 PTTAIQLTPDF-EMGEYRRQDLVYEKEDLLISG 141



 Score = 46.2 bits (108), Expect = 6e-10
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 145 GEITIKKDD-----CVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKV 199
           G I + +D      CV C +CA  CP   I L  ++ +     P    +I+   C++C +
Sbjct: 46  GRIVLTRDPDGDERCVACNLCAVACPVGCISLQKSERDDGRWYP-EFFRINFSRCIFCGL 104

Query: 200 CEKACPHNAIE 210
           CE+ACP  AI+
Sbjct: 105 CEEACPTTAIQ 115



 Score = 45.4 bits (106), Expect = 1e-09
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 114 KCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIP 173
           +CV C  C + CP   I +++   +          I    C+ CG+C E CP  AI+L P
Sbjct: 59  RCVACNLCAVACPVGCISLQKSERDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTP 118

Query: 174 N 174
           +
Sbjct: 119 D 119



 Score = 40.8 bits (94), Expect = 3e-08
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 253 PADAIEVEKPFEGELIID-----EPACNACGACISVCPCNALVFPQPEKQ-GDKVPNVV- 305
           P +A+     + G +++      +  C AC  C   CP   +   + E+  G   P    
Sbjct: 34  PEEAVYAAPRYRGRIVLTRDPDGDERCVACNLCAVACPVGCISLQKSERDDGRWYPEFFR 93

Query: 306 VNQDVCILCGACTHSCPVDAL 326
           +N   CI CG C  +CP  A+
Sbjct: 94  INFSRCIFCGLCEEACPTTAI 114



 Score = 38.9 bits (89), Expect = 1e-07
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 18/80 (22%)

Query: 29  DCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAP-------KLDISEKCVLCGMCACAC 81
           D  CV C +C+  CP   I      ++ K + D         +++ S +C+ CG+C  AC
Sbjct: 57  DERCVACNLCAVACPVGCI------SLQKSERDDGRWYPEFFRINFS-RCIFCGLCEEAC 109

Query: 82  PFDAVKLSINDKPITEMPQY 101
           P  A++L+    P  EM +Y
Sbjct: 110 PTTAIQLT----PDFEMGEY 125



 Score = 37.0 bits (84), Expect = 4e-07
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 192 DACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANI 251
           + CV C +C  ACP   I     K         PE +        I+   C+ CG C   
Sbjct: 58  ERCVACNLCAVACPVGCISL--QKSERDDGRWYPEFF-------RINFSRCIFCGLCEEA 108

Query: 252 CPADAIEVEKPFE 264
           CP  AI++   FE
Sbjct: 109 CPTTAIQLTPDFE 121



 Score = 36.2 bits (82), Expect = 7e-07
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 240 ELCVSCGWCANICPADAIEVEKPFEGE-------LIIDEPACNACGACISVCPCNALVFP 292
           E CV+C  CA  CP   I ++K    +         I+   C  CG C   CP  A+   
Sbjct: 58  ERCVACNLCAVACPVGCISLQKSERDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLT 117

Query: 293 QPEKQGD 299
              + G+
Sbjct: 118 PDFEMGE 124



 Score = 35.0 bits (79), Expect = 1e-06
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 32  CVGCGICSEICPTSAIEMGP---LGAIFKGDIDAPKLDI 67
           C+ CG+C E CPT+AI++ P   +G   + D+   K D+
Sbjct: 99  CIFCGLCEEACPTTAIQLTPDFEMGEYRRQDLVYEKEDL 137



 Score = 25.4 bits (54), Expect = 0.001
 Identities = 6/22 (27%), Positives = 15/22 (68%)

Query: 311 CILCGACTHSCPVDALTVKRTK 332
           C+ C  C  +CPV  +++++++
Sbjct: 60  CVACNLCAVACPVGCISLQKSE 81