Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 544 a.a., glutamate synthase, iron-sulfur cluster-binding subunit, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 51.2 bits (121), Expect = 6e-11
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 22/82 (26%)

Query: 25 LKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAP-------------------KL 65
          ++WD  TC  CG C+ +CP +AIE   LG   +  +DAP                   + 
Sbjct: 21 VEWDRATCALCGRCTAVCPVNAIE---LGVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRT 77

Query: 66 DISEKCVLCGMCACACPFDAVK 87
          D +  CV CGMC   CP +A++
Sbjct: 78 DAAYACVGCGMCTMVCPNNAIR 99



 Score = 41.6 bits (96), Expect = 5e-08
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 71  CVLCGMCACACPFDAVKLSINDKPITEMP--------QYPKIKRGIELNQS---KCVLCE 119
           C LCG C   CP +A++L ++ + I + P            +  G+         CV C 
Sbjct: 28  CALCGRCTAVCPVNAIELGVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRTDAAYACVGCG 87

Query: 120 QCELVCPQCAI 130
            C +VCP  AI
Sbjct: 88  MCTMVCPNNAI 98



 Score = 40.8 bits (94), Expect = 8e-08
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 27/85 (31%)

Query: 230 EIKGQTNIDKELCVSCGWCANICPADAIEVEKPFEGELIIDEP----------------- 272
           ++  Q   D+  C  CG C  +CP +AIE+      + I+D P                 
Sbjct: 16  DLPWQVEWDRATCALCGRCTAVCPVNAIEL--GVHRQRIVDAPVGLAKRPSNAHTVYHGV 73

Query: 273 --------ACNACGACISVCPCNAL 289
                   AC  CG C  VCP NA+
Sbjct: 74  RQRTDAAYACVGCGMCTMVCPNNAI 98



 Score = 38.5 bits (88), Expect = 4e-07
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 187 IKIDLDACVYCKVCEKACPHNAIEAICYKCPLASK----IKKPE----LYGEIKGQTNID 238
           ++ D   C  C  C   CP NAIE   ++  +        K+P     +Y  ++ +T+  
Sbjct: 21  VEWDRATCALCGRCTAVCPVNAIELGVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRTDA- 79

Query: 239 KELCVSCGWCANICPADAI 257
              CV CG C  +CP +AI
Sbjct: 80  AYACVGCGMCTMVCPNNAI 98



 Score = 38.1 bits (87), Expect = 5e-07
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 27/80 (33%)

Query: 154 CVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLD--------------------- 192
           C LCG C   CP +AIEL       +    I D  + L                      
Sbjct: 28  CALCGRCTAVCPVNAIEL------GVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRTDAAY 81

Query: 193 ACVYCKVCEKACPHNAIEAI 212
           ACV C +C   CP+NAI  +
Sbjct: 82  ACVGCGMCTMVCPNNAIRPV 101



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 16/78 (20%)

Query: 108 IELNQSKCVLCEQCELVCPQCAIDV----EREV---------PERKSLVLGEITIKKD-- 152
           +E +++ C LC +C  VCP  AI++    +R V         P     V   +  + D  
Sbjct: 21  VEWDRATCALCGRCTAVCPVNAIELGVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRTDAA 80

Query: 153 -DCVLCGICAEYCPADAI 169
             CV CG+C   CP +AI
Sbjct: 81  YACVGCGMCTMVCPNNAI 98



 Score = 28.9 bits (63), Expect = 3e-04
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 311 CILCGACTHSCPVDAL 326
           C LCG CT  CPV+A+
Sbjct: 28  CALCGRCTAVCPVNAI 43