Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 295 a.a., NADH:quinone oxidoreductase subunit RnfB (Shelley Haveman) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 71.6 bits (174), Expect = 2e-17
 Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 22/141 (15%)

Query: 154 CVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIEAIC 213
           C+  G C E CP DA+ +     N L+        +DL  C  C VC  ACP N +E I 
Sbjct: 140 CLGLGDCVEVCPFDALHI----ENGLT-------HVDLAKCTGCGVCINACPRNTLELIP 188

Query: 214 YKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANICPADAIEVEKPFEGELIIDEPA 273
            +  +A      E   ++K    + +  C++CG C   CPA AI  E    G + ID+  
Sbjct: 189 VRARVAVMCSTKE---KLKAVMEVCEVGCINCGKCVKACPAHAISQE---TGRIEIDQKK 242

Query: 274 CNACG-----ACISVCPCNAL 289
           C + G     AC++ CP N +
Sbjct: 243 CLSYGPDCNEACVTACPRNIM 263



 Score = 57.0 bits (136), Expect = 6e-13
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 11/104 (10%)

Query: 242 CVSCGWCANICPADAIEVEKPFEGELIIDEPACNACGACISVCPCNAL-VFPQPEKQG-- 298
           C+  G C  +CP DA+ +E    G   +D   C  CG CI+ CP N L + P   +    
Sbjct: 140 CLGLGDCVEVCPFDALHIEN---GLTHVDLAKCTGCGVCINACPRNTLELIPVRARVAVM 196

Query: 299 ----DKVPNVVVNQDV-CILCGACTHSCPVDALTVKRTKINMTE 337
               +K+  V+   +V CI CG C  +CP  A++ +  +I + +
Sbjct: 197 CSTKEKLKAVMEVCEVGCINCGKCVKACPAHAISQETGRIEIDQ 240



 Score = 53.1 bits (126), Expect = 9e-12
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 16/124 (12%)

Query: 28  DDCT--CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACPFDA 85
           D C+  C+G G C E+CP  A+ +         +     +D++ KC  CG+C  ACP + 
Sbjct: 134 DSCSYSCLGLGDCVEVCPFDALHI---------ENGLTHVDLA-KCTGCGVCINACPRNT 183

Query: 86  VKL-SINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVER---EVPERKS 141
           ++L  +  +         K+K  +E+ +  C+ C +C   CP  AI  E    E+ ++K 
Sbjct: 184 LELIPVRARVAVMCSTKEKLKAVMEVCEVGCINCGKCVKACPAHAISQETGRIEIDQKKC 243

Query: 142 LVLG 145
           L  G
Sbjct: 244 LSYG 247



 Score = 48.9 bits (115), Expect = 2e-10
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 26/108 (24%)

Query: 233 GQTNIDKELCVSCGWCANICPADAIEV-------------EKPFEGELIIDEPACNACGA 279
           G T++D   C  CG C N CP + +E+             ++  +  + + E  C  CG 
Sbjct: 160 GLTHVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEVGCINCGK 219

Query: 280 CISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCG-----ACTHSCP 322
           C+  CP +A+          +   + ++Q  C+  G     AC  +CP
Sbjct: 220 CVKACPAHAI--------SQETGRIEIDQKKCLSYGPDCNEACVTACP 259



 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 26/119 (21%)

Query: 20  VEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGA------IFKGDIDAPKLDISEKCVL 73
           +E  +   D   C GCG+C   CP + +E+ P+ A        K  + A        C+ 
Sbjct: 157 IENGLTHVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEVGCIN 216

Query: 74  CGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCV-----LCEQCELVCPQ 127
           CG C  ACP  A+                     IE++Q KC+       E C   CP+
Sbjct: 217 CGKCVKACPAHAISQETG---------------RIEIDQKKCLSYGPDCNEACVTACPR 260



 Score = 32.7 bits (73), Expect = 1e-05
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 12/56 (21%)

Query: 273 ACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDV--CILCGACTHSCPVDAL 326
           +C   G C+ VCP +AL           + N + + D+  C  CG C ++CP + L
Sbjct: 139 SCLGLGDCVEVCPFDAL----------HIENGLTHVDLAKCTGCGVCINACPRNTL 184