Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 211 a.a., hydrogenase, CooX subunit, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 46.6 bits (109), Expect = 6e-10
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 94  PITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKKDD 153
           P  E     + +  + L+ + CV C  C  VC   AI++     ER+     + T+  + 
Sbjct: 22  PFAEAHTPARFRGQVRLDPALCVGCAICHHVCAGGAINIA----EREDGSGYDFTVWHNT 77

Query: 154 CVLCGICAEYCPADAIELIPNDMNA 178
           C LCG+C  YCP  AI L  +  NA
Sbjct: 78  CALCGLCRHYCPTGAITLSNDWHNA 102



 Score = 44.3 bits (103), Expect = 3e-09
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 263 FEGELIIDEPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHSCP 322
           F G++ +D   C  C  C  VC   A+     E++     +  V  + C LCG C H CP
Sbjct: 32  FRGQVRLDPALCVGCAICHHVCAGGAINIA--EREDGSGYDFTVWHNTCALCGLCRHYCP 89

Query: 323 VDALTV 328
             A+T+
Sbjct: 90  TGAITL 95



 Score = 44.3 bits (103), Expect = 3e-09
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 232 KGQTNIDKELCVSCGWCANICPADAIEVEKPFEG---ELIIDEPACNACGACISVCPCNA 288
           +GQ  +D  LCV C  C ++C   AI + +  +G   +  +    C  CG C   CP  A
Sbjct: 33  RGQVRLDPALCVGCAICHHVCAGGAINIAEREDGSGYDFTVWHNTCALCGLCRHYCPTGA 92

Query: 289 L 289
           +
Sbjct: 93  I 93



 Score = 40.8 bits (94), Expect = 3e-08
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 25 LKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDIS---EKCVLCGMCACAC 81
          ++ D   CVGC IC  +C   AI +           D    D +     C LCG+C   C
Sbjct: 36 VRLDPALCVGCAICHHVCAGGAINIAERE-------DGSGYDFTVWHNTCALCGLCRHYC 88

Query: 82 PFDAVKLS 89
          P  A+ LS
Sbjct: 89 PTGAITLS 96



 Score = 29.6 bits (65), Expect = 7e-05
 Identities = 23/111 (20%), Positives = 33/111 (29%), Gaps = 25/111 (22%)

Query: 187 IKIDLDACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCG 246
           +++D   CV C +C   C   AI                E          +    C  CG
Sbjct: 36  VRLDPALCVGCAICHHVCAGGAINI-------------AEREDGSGYDFTVWHNTCALCG 82

Query: 247 WCANICPADAIEVEKPFEGELIIDEP------------ACNACGACISVCP 285
            C + CP  AI +   +    +  +              C  CGA I   P
Sbjct: 83  LCRHYCPTGAITLSNDWHNAHLQSQKYDWCERQFVPFMQCEGCGAHIRPLP 133