Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 162 a.a., NADH dehydrogenase I, chain I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 50.4 bits (119), Expect = 3e-11
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 154 CVLCGICAEYCPADAIELIPNDM---NALSLNPIADIKIDLDACVYCKVCEKACPHNAI 209
           CV CG+C   CP D I +    +   +      +A  + DL AC++C++C  ACPH+AI
Sbjct: 70  CVACGLCQIACPNDTITVTSETIETEDGKKKKILAKYEYDLGACMFCQLCVNACPHDAI 128



 Score = 49.3 bits (116), Expect = 7e-11
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 6/94 (6%)

Query: 56  FKGDIDAPKLDISE-KCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSK 114
           F+G +  P  + +E +CV CG+C  ACP D + ++ ++   TE  +  KI    E +   
Sbjct: 54  FRGTLAMPHNENNEHRCVACGLCQIACPNDTITVT-SETIETEDGKKKKILAKYEYDLGA 112

Query: 115 CVLCEQCELVCPQCAI----DVEREVPERKSLVL 144
           C+ C+ C   CP  AI    + E  V +R  LVL
Sbjct: 113 CMFCQLCVNACPHDAITFDQNFEHAVFDRTKLVL 146



 Score = 47.4 bits (111), Expect = 3e-10
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 109 ELNQSKCVLCEQCELVCPQCAIDVEREVPE----RKSLVLGEITIKKDDCVLCGICAEYC 164
           E N+ +CV C  C++ CP   I V  E  E    +K  +L +       C+ C +C   C
Sbjct: 64  ENNEHRCVACGLCQIACPNDTITVTSETIETEDGKKKKILAKYEYDLGACMFCQLCVNAC 123

Query: 165 PADAIELIPNDMNAL 179
           P DAI    N  +A+
Sbjct: 124 PHDAITFDQNFEHAV 138



 Score = 42.7 bits (99), Expect = 6e-09
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 194 CVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANICP 253
           CV C +C+ ACP++ I             KK     +I  +   D   C+ C  C N CP
Sbjct: 70  CVACGLCQIACPNDTITVTSETIETEDGKKK-----KILAKYEYDLGACMFCQLCVNACP 124

Query: 254 ADAIEVEKPFE 264
            DAI  ++ FE
Sbjct: 125 HDAITFDQNFE 135



 Score = 40.4 bits (93), Expect = 3e-08
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 11/63 (17%)

Query: 242 CVSCGWCANICPADAIEV-----------EKPFEGELIIDEPACNACGACISVCPCNALV 290
           CV+CG C   CP D I V           +K    +   D  AC  C  C++ CP +A+ 
Sbjct: 70  CVACGLCQIACPNDTITVTSETIETEDGKKKKILAKYEYDLGACMFCQLCVNACPHDAIT 129

Query: 291 FPQ 293
           F Q
Sbjct: 130 FDQ 132



 Score = 37.0 bits (84), Expect = 3e-07
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 270 DEPACNACGACISVCPCNALVFPQP--EKQGDKVPNVVVNQD----VCILCGACTHSCPV 323
           +E  C ACG C   CP + +       E +  K   ++   +     C+ C  C ++CP 
Sbjct: 66  NEHRCVACGLCQIACPNDTITVTSETIETEDGKKKKILAKYEYDLGACMFCQLCVNACPH 125

Query: 324 DALT 327
           DA+T
Sbjct: 126 DAIT 129



 Score = 37.0 bits (84), Expect = 3e-07
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 32  CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEK-------CVLCGMCACACPFD 84
           CV CG+C   CP   I +       +   D  K  I  K       C+ C +C  ACP D
Sbjct: 70  CVACGLCQIACPNDTITVTSETIETE---DGKKKKILAKYEYDLGACMFCQLCVNACPHD 126

Query: 85  AVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQ 120
           A+    N     E   + + K  ++LN +   + E+
Sbjct: 127 AITFDQN----FEHAVFDRTKLVLQLNHAGSKVIEK 158



 Score = 30.0 bits (66), Expect = 4e-05
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 301 VPNVVVNQDVCILCGACTHSCPVDALTV 328
           +P+   N+  C+ CG C  +CP D +TV
Sbjct: 60  MPHNENNEHRCVACGLCQIACPNDTITV 87