Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 293 a.a., Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 68.2 bits (165), Expect = 3e-16
 Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 25/160 (15%)

Query: 154 CVLCGICAEYCPADAIELIPNDMNALSLNPIADI-KIDLDACVYCKVCEKACPHNAIEAI 212
           C+ CG C   C  DAI +          NP   + ++D   C  C  C KACP   IE  
Sbjct: 142 CLGCGDCVAACQFDAIHM----------NPETGLPEVDEAKCTACGACVKACPKAIIEIR 191

Query: 213 CYKCPLASKIKKPELYGEIKGQTNIDKELC----VSCGWCANICPADAIEVEKPFEGELI 268
               P   K ++  +    K +  + ++ C    + CG C   CP +AI +E        
Sbjct: 192 ----PQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCVKTCPFEAITLENNLA---Y 244

Query: 269 IDEPACNACGACISVCPCNALV---FPQPEKQGDKVPNVV 305
           ID   C +C  C+ VCP N ++   FP  + + ++ P  V
Sbjct: 245 IDPNKCKSCRKCVEVCPQNTIIELNFPPRKPKAEEAPKTV 284



 Score = 66.6 bits (161), Expect = 8e-16
 Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 33/148 (22%)

Query: 71  CVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAI 130
           C+ CG C  AC FDA+ ++    P T +P         E++++KC  C  C   CP+  I
Sbjct: 142 CLGCGDCVAACQFDAIHMN----PETGLP---------EVDEAKCTACGACVKACPKAII 188

Query: 131 DVEREVPERKSLVLGEITIKKD---------DCVLCGICAEYCPADAIELIPNDMNALSL 181
           ++  +  + + + +  +   K           C+ CG C + CP +AI L     N L+ 
Sbjct: 189 EIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCVKTCPFEAITL----ENNLAY 244

Query: 182 NPIADIKIDLDACVYCKVCEKACPHNAI 209
                  ID + C  C+ C + CP N I
Sbjct: 245 -------IDPNKCKSCRKCVEVCPQNTI 265



 Score = 63.5 bits (153), Expect = 6e-15
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 14/100 (14%)

Query: 242 CVSCGWCANICPADAIEVEKPFEGELIIDEPACNACGACISVCPCNALVFPQPE-KQGDK 300
           C+ CG C   C  DAI +  P  G   +DE  C ACGAC+  CP  A++  +P+ K+  +
Sbjct: 142 CLGCGDCVAACQFDAIHMN-PETGLPEVDEAKCTACGACVKACP-KAIIEIRPQGKKSRR 199

Query: 301 VPNVVVNQD-----------VCILCGACTHSCPVDALTVK 329
           V    VN+D            CI CG C  +CP +A+T++
Sbjct: 200 VYISCVNKDKGAVARKACTVSCIGCGKCVKTCPFEAITLE 239



 Score = 60.1 bits (144), Expect = 7e-14
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 25/122 (20%)

Query: 28  DDCTCVGCGICSEICPTSAIEMGPLG----AIFKGDIDAPKLDISEK-----CVLCGMCA 78
           D+  C  CG C + CP + IE+ P G     ++   ++  K  ++ K     C+ CG C 
Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCV 228

Query: 79  CACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPE 138
             CPF+A+ L  N   I               + +KC  C +C  VCPQ  I +E   P 
Sbjct: 229 KTCPFEAITLENNLAYI---------------DPNKCKSCRKCVEVCPQNTI-IELNFPP 272

Query: 139 RK 140
           RK
Sbjct: 273 RK 274



 Score = 42.0 bits (97), Expect = 2e-08
 Identities = 33/149 (22%), Positives = 49/149 (32%), Gaps = 41/149 (27%)

Query: 194 CVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANICP 253
           C+ C  C  AC  +AI               PE      G   +D+  C +CG C   CP
Sbjct: 142 CLGCGDCVAACQFDAIHM------------NPET-----GLPEVDEAKCTACGACVKACP 184

Query: 254 ADAIEVEKPFEGELII-------DEPA---------CNACGACISVCPCNALVFPQPEKQ 297
              IE+    +    +       D+ A         C  CG C+  CP  A+        
Sbjct: 185 KAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCVKTCPFEAITLEN---- 240

Query: 298 GDKVPNVVVNQDVCILCGACTHSCPVDAL 326
                   ++ + C  C  C   CP + +
Sbjct: 241 ----NLAYIDPNKCKSCRKCVEVCPQNTI 265



 Score = 23.1 bits (48), Expect = 0.010
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 20  VEKRVLKWDDCTCVGCGICSEICPTSAI 47
           +E  +   D   C  C  C E+CP + I
Sbjct: 238 LENNLAYIDPNKCKSCRKCVEVCPQNTI 265