Pairwise Alignments

Query, 254 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 250 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis JJ

 Score =  155 bits (393), Expect = 6e-43
 Identities = 93/251 (37%), Positives = 142/251 (56%), Gaps = 9/251 (3%)

Query: 4   PTILVIISSILILTSFSGCTSSYGKEYNTV-NPGVLTVGITPEMPPQQYYEDGELKGFDI 62
           P IL+I +  LI+  FSGCT     E NT  N  VL VG   ++ P  Y EDGE KGF++
Sbjct: 4   PKILIISTIFLII--FSGCT-----EKNTESNNRVLNVGACTDLAPTSYLEDGEFKGFEV 56

Query: 63  DLMKEIANNMGLKPEFKIYEYGGAHEALLNGEIDC-LPSMTISPERKEDMDFSRAYIQTY 121
           +L+ EI+  + LKPEF  Y +    +A+  G +DC +  +  +PER+  MDFSR Y  TY
Sbjct: 57  ELIYEISKRLDLKPEFIAYSFSELLDAVSEGNVDCGIGYIGRTPERQLKMDFSRQYAYTY 116

Query: 122 VVVAVFENSPYRELKDLNGKNIAVVTNTYTEDWAKEYLGSLNANIKSYDSVEGLVSDVYS 181
             + V +NS    +K L  K++ V+ ++  E W +    S++ +I SY++   +  D+ S
Sbjct: 117 SSILVKQNSECVGIKCLEHKSVGVLKDSIEEKWLESLSKSMDFDIISYENQNDIHKDLLS 176

Query: 182 GNIDAVVTDQIQLDYYSKQNNFESRLIFEKMTIEYWAIAVKKDNHNLQNEINDVLFELDE 241
           G ID+ VTD +   Y  ++ N E ++I +K  I Y AIA+   N  L+  I+  L E++ 
Sbjct: 177 GKIDSEVTDHLTSLYLIQKYNSELKIIGDKFDIIYIAIAIDNTNPELKKSIDAALLEMEN 236

Query: 242 NKALYELKNKW 252
           +  L +LK KW
Sbjct: 237 DGTLVKLKEKW 247