Pairwise Alignments

Query, 254 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 244 a.a., amino acid ABC transporter, periplasmic amino acid-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 86.7 bits (213), Expect = 4e-22
 Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 10/211 (4%)

Query: 37  VLTVGITPEMPPQQYY---EDGELKGFDIDLMKEIANNMGLKPEFKIYEYGGAHEALLNG 93
           VL VG     PP +Y       E+KGFDI+L K+IA + G   + +  ++     AL +G
Sbjct: 27  VLVVGTNAAFPPFEYVGGQSGDEIKGFDIELAKQIAKDAGKTLKVENMKFDSLIVALNSG 86

Query: 94  EIDCLPS-MTISPERKEDMDFSRAYIQ-TYVVVAVFENSPYRELKDLNGKNIAVVTNTYT 151
           +ID + S MTI+PER+  ++FS  Y + T V++   +N     L D+  K+ AV   +  
Sbjct: 87  KIDFIASGMTITPERQASVNFSEPYYEATQVLLVNKDNESIHTLDDIKDKHFAVQLGSTA 146

Query: 152 EDWAKEYLGSLNANIKSYDSVEGLVSDVYSGNIDAVVTDQIQLDYYSKQNNFESRLIFEK 211
           +  +K+Y   + A    +++    + ++ +G +D V+ D      Y  +N  + +LI   
Sbjct: 147 DMMSKKYTQKVTAFNTGFEA----IMELKNGKVDLVLFDSEPAANYLAKNP-DLKLIKLD 201

Query: 212 MTIEYWAIAVKKDNHNLQNEINDVLFELDEN 242
              E++  AV K    L N IN  L  L EN
Sbjct: 202 FPPEFYGFAVSKQQPELLNSINHTLKNLKEN 232