Pairwise Alignments

Query, 669 a.a., ATP-dependent DNA helicase from Methanococcus maripaludis S2

Subject, 759 a.a., Rad3-related DNA helicases from Pseudomonas stutzeri RCH2

 Score = 62.4 bits (150), Expect = 8e-14
 Identities = 69/262 (26%), Positives = 108/262 (41%), Gaps = 27/262 (10%)

Query: 370 KNNGSILC-EPVLVSTYLN-RLYGDASVVHCSATLGDLKIHAIKTGMGRSETLL-LDSPF 426
           K   SILC   V+ + +L  RL    S V  SATL   + HA   G+  +   + ++SPF
Sbjct: 495 KARRSILCLRNVVPAPFLAPRLAQARSSVLFSATLSPRRFHADMLGLPAASAWIDVESPF 554

Query: 427 SKDRRNIIALSDGEDMKFNSIDFQSNNKKRNKANENLFKMVNAAKGNTLILFKSFGDLKT 486
              +  +            S  +Q          E + +      GN L  F SF  L+ 
Sbjct: 555 QSRQLRVCLAGHV------STRYQDRQASLGAVVELVARQYLERPGNYLAFFSSFDYLQQ 608

Query: 487 A----HEYFLDAGYRGNIYCYESGMDGKAAKKLKEDFQKYG---GLLLATGRFAEGVDIP 539
                 E++ D  +    +    GM   A     E F ++    G  +  G FAEG+D+P
Sbjct: 609 VTALLREHYPDVPF----WEQTRGMQEAARNAFLERFTEHSEGIGFAVLGGAFAEGIDLP 664

Query: 540 GDALTCVIIDSLPFPVPTPLLKREQTLLEERLKSRKVKDAHWSAFLMTSFHIMARTVIQM 599
           G  L    + +L  P   P+ ++ +T L+E              +  T  +   + V+Q 
Sbjct: 665 GQRLIGAFVATLGLPQVNPVNEQFKTRLDELF-------GRGHGYDYTYLYPGLQKVVQA 717

Query: 600 IGRLIRTETDYGVVVIQDKRFN 621
            GR+IRT+ D GVV + D RF+
Sbjct: 718 AGRVIRTQQDEGVVHLIDDRFS 739



 Score = 40.0 bits (92), Expect = 4e-07
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 10  SKEKFPYHGMRPQQEVLMGKIYECVTKKKNLVVEAPTGVGKTLSYLIPAL 59
           S  +FP+   R  Q  L   +Y+       L+ +APTG+GKTL+ L P L
Sbjct: 174 SNLRFPHDDFRAGQRQLAEAVYKAACTGTTLMAQAPTGIGKTLATLFPQL 223