Pairwise Alignments

Query, 669 a.a., ATP-dependent DNA helicase from Methanococcus maripaludis S2

Subject, 641 a.a., helicase c2 (RefSeq) from Shewanella loihica PV-4

 Score =  127 bits (320), Expect = 1e-33
 Identities = 174/666 (26%), Positives = 281/666 (42%), Gaps = 147/666 (22%)

Query: 17  HGMRPQQEVLMGKIYECVTKKKNLVVEAPTGVGKTLSYLIPALYFAERGKRVMILTETID 76
           +  R QQ+ +  ++ E + K  NLVVEA TGVGKT +YL+PAL     GK+V++ T + +
Sbjct: 26  YSCRVQQQTMATRVSETLQKGDNLVVEAGTGVGKTYAYLVPALL---SGKQVIVSTGSKN 82

Query: 77  QQERIV-EDLNSLKHNL----KVSFMMGKGNFFCKAKGEKANTLYCQLNKGCIYRPNKKP 131
            QE++  +DL +L + L    KV+ + G+ N+ C+   EK  +   ++N G I     + 
Sbjct: 83  LQEQLFFKDLPALLNILGIRPKVALLKGRSNYLCQYLMEKQLS-GVEVNDGKILDDLLR- 140

Query: 132 VCVCGTKKEKIEFDGNTTFYCP--------------LCL---CDY------QKAKIESFD 168
             +     + ++ D  + +  P               C+   CD+      +KA+ ++ D
Sbjct: 141 --IDQWASQTVDGDIGSLYAVPENSPAIPLVVSSKESCIGKACDHYEACFTRKARAKALD 198

Query: 169 ANIIVMNNSIYYYLKDEIDKKK-------QTDIVICDEAHKLEGSIRNAATIVINPKYAL 221
           A IIV+N+ +++   D I K+         +D+VI DEAH L                  
Sbjct: 199 AKIIVVNHHLFF--ADRILKETGFAELLPDSDVVIFDEAHLLPD---------------- 240

Query: 222 RRLRFMAYHYSNSRLRVH-MDRVTEEDDEIFWTIVEDYVVKNASGKDCKNSLVF------ 274
                +A  Y   +L +  + R+ E  +E++ T + D     A    C   L+       
Sbjct: 241 -----IAVTYFGQQLSIKSLIRLLERFNELYRTQMADSPQIGAMTARCHTQLLHWQGLLF 295

Query: 275 -------------DGFKITSFGLKEDVAILGTLLEGYNEIVKIKEKIEDLSENEELDKKD 321
                              S+ L  ++    T+L GY            L  NE  D  D
Sbjct: 296 ATEERDWRRLIGDKALMEASWALVSELTAYRTMLLGY------------LGRNEAFD--D 341

Query: 322 LKFKIDNKALIPLELQFVADRRISDVPMVEFLENLGNLRNITGNFVVYKNNGSILCEPVL 381
              KID                +S + +    +N  +  +I   +     + ++   P+ 
Sbjct: 342 GVEKIDGL--------------LSKLTVFIQCDNPDSAYSIDYGY----QHLTLRISPIK 383

Query: 382 VSTYLNRLYG-DASVVHCSATLG---DLKIHAIKTGMGRSETLLLDSPFSKDRRNIIALS 437
           V+     L+  D S +  SATL    DL +     G+ ++ T +LDSPF   R+++  + 
Sbjct: 384 VAKECQSLFSPDVSWIFTSATLQINRDLSLFTKAMGLEKANTSILDSPFDYRRQSLFCVP 443

Query: 438 DGEDMKFNSIDFQSNNKKRNKANENLFKMVNAAKGNTLILFKSFGDLKTAHEYFLDAGYR 497
                  +     S  +   +  E   K +NAAKG T +LF S   L       +    +
Sbjct: 444 R------HLASVTSQERAARQLVEVAVKAINAAKGRTFMLFTSHRMLN-----LVAVMLQ 492

Query: 498 GNIYCYESGMDGKAAKK--LKEDFQKYGGLLLATGRFAEGVDIPGDALTCVIIDSLPFPV 555
           G I  Y   + G+A K+  LK+  Q    +LL TG F EGVD+ G  L+CVIID LPF  
Sbjct: 493 GRID-YPLLVQGQAGKQTLLKKYRQLGNAVLLGTGAFWEGVDVRGKLLSCVIIDKLPFVS 551

Query: 556 PTPLLKREQTLLEERLK--SRKVKDAHWSAFLMTSFHIMARTVIQMIGRLIRTETDYGVV 613
           P      +  L + R     R+ KD     F+  S       + Q +GRLIR E D GV+
Sbjct: 552 P------DDNLYKARADGVQREGKD----PFMTLSLPQAVIALNQGVGRLIRDEKDRGVL 601

Query: 614 VIQDKR 619
           ++ D R
Sbjct: 602 ILCDNR 607