Pairwise Alignments

Query, 349 a.a., hydroxymethylglutaryl-CoA synthase from Methanococcus maripaludis S2

Subject, 316 a.a., 3-oxoacyl-ACP synthase III from Vibrio cholerae E7946 ATCC 55056

 Score = 52.8 bits (125), Expect = 1e-11
 Identities = 72/300 (24%), Positives = 114/300 (38%), Gaps = 24/300 (8%)

Query: 6   IVGYGSDLPKYRIKAEDIAGAWGKDAQAIKRGLVVNEKSVPGPDEDTATIAVQSARRALS 65
           I+G GS LP       D+        + I     + E+ +   +E  A +A  +A+ A++
Sbjct: 5   ILGTGSYLPSQVRTNADLEKMVETSDEWIVARTGIRERRIAADNETVADMAFFAAQNAIN 64

Query: 66  RAGINPKDIGAVYVGSESHPYAVKPTSGIVAEACGVSPDFTAADLEFACKAGTAGIQMCM 125
            AGI+  DI  + V + S  +     +  V    G+     A DL  AC      + +  
Sbjct: 65  MAGIDKHDIDMIIVATTSASHTFPSAACQVQGKLGIK-GCPAFDLAAACSGFMYALSIAD 123

Query: 126 GLVGSEMMEYAMAVGADTAQGA--PGDALEYTAAAGGA-AFIIGAKKEEFIAKFNGTYSY 182
             V S M ++ + +GAD       P D         GA A ++GA  E  I       ++
Sbjct: 124 QHVKSGMCKHVLVIGADALSKTCDPTDRSTIILFGDGAGAVVVGASNEPGILS-----TH 178

Query: 183 TTDTPDFWRREHEHYPKHGG------RFTGEPAYFKHVLNGAKGMMEKMGTTS---KDYD 233
                +F        P  GG         G   +   V   +K +++ +   +    + D
Sbjct: 179 IHADGEFGDLLSLEVPVRGGDSDKWLHMAGNEVFKVAVTQLSKLVVDTLKANNMHKSELD 238

Query: 234 YCVFHQPNGKFYLTAAKKLGFTEEQYKYGLLTPYLGNTYSGAVPLGLSNILDHAKADDRI 293
           + V HQ N +     AKKL  + +Q    L     GNT +  VP      LD A  D RI
Sbjct: 239 WLVPHQANYRIISATAKKLSMSLDQVVITL--DRHGNTSAATVP----TALDEAVRDGRI 292